| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10008147m |
| Family | CBM22 |
| Protein Properties | Length: 1098 Molecular Weight: 121881 Isoelectric Point: 5.1525 |
| Chromosome | Chromosome/Scaffold: 1 Start: 3368619 End: 3373132 |
| Description | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM22 | 384 | 516 | 6.4e-29 |
| IFLNSSFSDGLNHWSGRGCNLMLHESLANGKILPHSGTCFASASERTHKWSGIEQDITERVQRKLIYEASSVVRLSHSHQTVQATLYVQYLDQREEYIGI SSVQAQHDDWVQLKGKFLLNGSPARAVVYIEGP | |||
| CBM22 | 217 | 347 | 1.4e-30 |
| NIIKNHDFSDGLYSWNANSCDSFVVSSNDCNLESYAVVNNRSETWQGLEQDITDRVSPGCSYKVSASVSVSGPILGSAQVLATLRLEHQSSATEYQGIGK IYASKDIWKTLEGTFLLSGRPDRVVFFLEGP | |||
| CBM22 | 39 | 178 | 1.2e-36 |
| NIVVNGDFSAGTESWYPNGCEAFVVSSDPFISEATSAESSSGGYVVVTNRKDTWQGLEQDITSRVSPGTTYTVSACVGVSGAFHESAEVLATVRLEHEAS PTEYLFIGKTFASGDKWVDLEGTFSISNMPDRVVLYLEGP | |||
| CBM22 | 551 | 695 | 7.9e-38 |
| NIVSNSHLSDGTIDGWFPLGNCHLKVGEGSPRILPPLARDSLTSTHGYLSGKYVLATNRSGTWMGPAQMITDRVELFLTYQVSAWVKIGSGGLTSSQDVN IALSVDGKWVNGGKVEVDDGDWHEVVGSFRIEKQAKEIMLHVQGP | |||
| GH10 | 753 | 1038 | 0 |
| QTRNSFPLGSCISRSNIDNKDFVDFFLNNFNWAVFGNELKWYWTEPEQGNFNYRDADEMLEFCERYNIETRGHCIFWEVESAIQPWVQQLSGSELEAAVE NRVTDLLTRYNGKFRHYDVNNEMLHGSFYRDRLGSDARAKMFKAAHELDPSATLFLNEYHIEDGFDSRSSPEKYIKLVHKLQKKGAPVGGIGIQGHITSP VGHIVRSALDKLSTLGLPIWFTELDVSSINEHIRGDDLEVMLWEAFAHPAVEGVMLWGFWELFMSREHAHLVNADGEVNEAGKRFL | |||
| Full Sequence |
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| Protein Sequence Length: 1098 Download |
| MFVGLLLLQL STFVFLPSPL SSSFSIKVQA TLMGMADPNI VVNGDFSAGT ESWYPNGCEA 60 FVVSSDPFIS EATSAESSSG GYVVVTNRKD TWQGLEQDIT SRVSPGTTYT VSACVGVSGA 120 FHESAEVLAT VRLEHEASPT EYLFIGKTFA SGDKWVDLEG TFSISNMPDR VVLYLEGPAP 180 GKDLLIRSVT VRSSTTSDFQ YTKENTEASS GFPPALNIIK NHDFSDGLYS WNANSCDSFV 240 VSSNDCNLES YAVVNNRSET WQGLEQDITD RVSPGCSYKV SASVSVSGPI LGSAQVLATL 300 RLEHQSSATE YQGIGKIYAS KDIWKTLEGT FLLSGRPDRV VFFLEGPSPG IDLLIKSVTI 360 HCESDNQFEK RSREFCPAPE YDHIFLNSSF SDGLNHWSGR GCNLMLHESL ANGKILPHSG 420 TCFASASERT HKWSGIEQDI TERVQRKLIY EASSVVRLSH SHQTVQATLY VQYLDQREEY 480 IGISSVQAQH DDWVQLKGKF LLNGSPARAV VYIEGPPPGI DVFVDHFVVK PAEKDTPSRR 540 PYTESHAFGM NIVSNSHLSD GTIDGWFPLG NCHLKVGEGS PRILPPLARD SLTSTHGYLS 600 GKYVLATNRS GTWMGPAQMI TDRVELFLTY QVSAWVKIGS GGLTSSQDVN IALSVDGKWV 660 NGGKVEVDDG DWHEVVGSFR IEKQAKEIML HVQGPSPGVD LMVSGLQIFA VDHKLRLNYL 720 RGQADVVRKR NVCLKFSGLD PSELSGATVK IRQTRNSFPL GSCISRSNID NKDFVDFFLN 780 NFNWAVFGNE LKWYWTEPEQ GNFNYRDADE MLEFCERYNI ETRGHCIFWE VESAIQPWVQ 840 QLSGSELEAA VENRVTDLLT RYNGKFRHYD VNNEMLHGSF YRDRLGSDAR AKMFKAAHEL 900 DPSATLFLNE YHIEDGFDSR SSPEKYIKLV HKLQKKGAPV GGIGIQGHIT SPVGHIVRSA 960 LDKLSTLGLP IWFTELDVSS INEHIRGDDL EVMLWEAFAH PAVEGVMLWG FWELFMSREH 1020 AHLVNADGEV NEAGKRFLEM KREWLTFVDG VIEDEGGLEF RGYHGSYTVE VVTSESKYVT 1080 NFVVDKGNSP IDVIINL* 1140 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam02018 | CBM_4_9 | 1.0e-21 | 217 | 349 | 135 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
| pfam02018 | CBM_4_9 | 4.0e-23 | 39 | 182 | 145 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
| COG3693 | XynA | 4.0e-38 | 746 | 1011 | 292 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| pfam00331 | Glyco_hydro_10 | 1.0e-78 | 756 | 1039 | 304 | + Glycosyl hydrolase family 10. | ||
| smart00633 | Glyco_10 | 2.0e-84 | 791 | 1037 | 268 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_172476.1 | 0 | 35 | 1097 | 1 | 1063 | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein [Arabidopsis thaliana] |
| RefSeq | XP_002301133.1 | 1e-33 | 34 | 374 | 330 | 675 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002301133.1 | 0 | 38 | 536 | 163 | 667 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002301133.1 | 0 | 39 | 1097 | 2 | 1049 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002301133.1 | 0 | 382 | 708 | 1 | 314 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1i1x_A | 6e-28 | 781 | 979 | 39 | 241 | A Chain A, Structure And Mechanisim Of Core 2 Beta1,6-N- Acetylglucosaminyltransferase: A Metal-Ion Independent Gt-A Glycosyltransferase |
| PDB | 1i1w_A | 6e-28 | 781 | 979 | 39 | 241 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 2bnj_A | 1e-27 | 781 | 979 | 39 | 241 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
| PDB | 1xyz_B | 5e-27 | 722 | 1011 | 2 | 307 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
| PDB | 1xyz_A | 5e-27 | 722 | 1011 | 2 | 307 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
