Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10008187m |
Family | CBM57 |
Protein Properties | Length: 1016 Molecular Weight: 112447 Isoelectric Point: 6.8078 |
Chromosome | Chromosome/Scaffold: 1 Start: 10173786 End: 10180115 |
Description | Leucine-rich repeat transmembrane protein kinase |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM57 | 404 | 579 | 3.8e-26 |
LHINCGGDNIVITNSSQHSKITYQADNYKLSAATNQHFKNWGISNTGVFTDDNEGDSEDQYILSTSLSGDSPDIYKTARRSSLSLVYYAFCLENGAYDVK LHFMEIQFYDEELYKRLGRRIFDVYVQGELFLRDFNIKEEANGALKPIMKEKKAVNVSDHMLEIRLYWAGKGTTLI |
Full Sequence |
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Protein Sequence Length: 1016 Download |
MLIGFSVLLL FFTIITIFFA IPTSVLSTLH PDELNTLEKI ATTLGIKEFN LRNGDPCSLG 60 TLTMMQQVTS VSNPKMKNAI GCDCSLYNND TCHITSIDLK TLSLPGILPP ELADLRYLQR 120 IELCRNYLSG SIPMEWASMP HLTTISVCAN NLSGKLPPGL QNFKNLTSLG IEANQFSGPI 180 PDELGNMTKL EKLQLGSNRF TGSLPDSFAK LINLKDFRIS DNNFTGIIPG YIGNWFELRE 240 LHISASGLKG PIPAVGRLTK LKKLIITGTT GINYFPNITS NAIKTLTLRN VSLYGLIPSY 300 IWSKPELRTL DLSFNKLTGE IHGVRNTPIY TYLTGNELYG DVESSIFLND KSNIDLSYNN 360 FSWSSSCKDK SNINTYQSSY LKTNLTELLP CAGSVNCTNY QRFLHINCGG DNIVITNSSQ 420 HSKITYQADN YKLSAATNQH FKNWGISNTG VFTDDNEGDS EDQYILSTSL SGDSPDIYKT 480 ARRSSLSLVY YAFCLENGAY DVKLHFMEIQ FYDEELYKRL GRRIFDVYVQ GELFLRDFNI 540 KEEANGALKP IMKEKKAVNV SDHMLEIRLY WAGKGTTLIP QRGNYGPLIS AISLCHSLEP 600 RCGAENTEHH TKYPLIVGVT IASVTVILSA MGIYAWKRSR GDKNIIEREL RAQGLQTLCF 660 TWRQLQAATN NFDEANKLGE GGFGSVFKGE LSDGTIIAVK QLSSKSCQGN REFVNEIGMI 720 SGLNHPNLVK LYGCCVEKDH LLLVYEYMEN NSLALPLFEK GSLKLDWAAR QKICLGIARG 780 LAFLHEGSAM RMVHRDIKTT NVLLDADLNA KISDFGLARL HEAEHSHIST KIAGTIGYMA 840 PEYALWGQLT EKADVYSFGV VAMEIVSGKS NTKQQGNVSL INWALTLQQT GDIMDIVDAM 900 LKGEFNNNEA ARMIKVALVC INSSPSLRPT MSEVVQMLEG EMEIPQVMSG PGLYGPNWSI 960 SKLKDIDTHG SSSKFGVTDH QTTTVKSSAS GSNLYPLYPE SMILNSTIEF SSSSL* 1020 |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
pfam07714 | Pkinase_Tyr | 5.0e-51 | 677 | 938 | 278 | + Protein tyrosine kinase. |
smart00219 | TyrKc | 3.0e-51 | 677 | 938 | 271 | + Tyrosine kinase, catalytic domain. Phosphotransferases. Tyrosine-specific kinase subfamily. |
pfam11721 | Malectin | 2.0e-52 | 404 | 592 | 190 | + Di-glucose binding within endoplasmic reticulum. Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan. |
smart00221 | STYKc | 2.0e-52 | 677 | 938 | 277 | + Protein kinase; unclassified specificity. Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. |
cd00192 | PTKc | 4.0e-54 | 676 | 939 | 289 | + Catalytic domain of Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. |
Gene Ontology | |
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GO Term | Description |
GO:0004672 | protein kinase activity |
GO:0005515 | protein binding |
GO:0005524 | ATP binding |
GO:0006468 | protein phosphorylation |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAG10622.1 | 0 | 9 | 1011 | 51 | 1013 | AC008030_22 Putative receptor-like serine/threonine kinase - partial protein [Arabidopsis thaliana] |
GenBank | AAG50772.1 | 0 | 32 | 1015 | 7 | 920 | AC079288_1 receptor-like serine/threonine kinase (RFK1), putative [Arabidopsis thaliana] |
GenBank | AAG50774.1 | 0 | 5 | 1002 | 20 | 968 | AC079288_3 receptor protein kinase, putative [Arabidopsis thaliana] |
RefSeq | NP_174266.2 | 0 | 10 | 1004 | 20 | 966 | ATP binding / kinase/ protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase [Arabidopsis thaliana] |
RefSeq | NP_174267.4 | 0 | 5 | 1002 | 20 | 1006 | kinase [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3ulz_A | 0 | 660 | 941 | 20 | 309 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 3uim_A | 0 | 660 | 941 | 20 | 309 | A Chain A, Structural Basis For The Impact Of Phosphorylation On Plant Receptor- Like Kinase Bak1 Activation |
PDB | 3tl8_H | 0 | 660 | 941 | 28 | 317 | B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector |
PDB | 3tl8_G | 0 | 660 | 941 | 28 | 317 | B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector |
PDB | 3tl8_D | 0 | 660 | 941 | 28 | 317 | B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector |