| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10008217m |
| Family | CBM22 |
| Protein Properties | Length: 958 Molecular Weight: 107092 Isoelectric Point: 5.6376 |
| Chromosome | Chromosome/Scaffold: 1 Start: 3368619 End: 3373132 |
| Description | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM22 | 244 | 376 | 5.3e-29 |
| IFLNSSFSDGLNHWSGRGCNLMLHESLANGKILPHSGTCFASASERTHKWSGIEQDITERVQRKLIYEASSVVRLSHSHQTVQATLYVQYLDQREEYIGI SSVQAQHDDWVQLKGKFLLNGSPARAVVYIEGP | |||
| CBM22 | 78 | 208 | 1.1e-30 |
| NIIKNHDFSDGLYSWNANSCDSFVVSSNDCNLESYAVVNNRSETWQGLEQDITDRVSPGCSYKVSASVSVSGPILGSAQVLATLRLEHQSSATEYQGIGK IYASKDIWKTLEGTFLLSGRPDRVVFFLEGP | |||
| CBM22 | 411 | 555 | 6.5e-38 |
| NIVSNSHLSDGTIDGWFPLGNCHLKVGEGSPRILPPLARDSLTSTHGYLSGKYVLATNRSGTWMGPAQMITDRVELFLTYQVSAWVKIGSGGLTSSQDVN IALSVDGKWVNGGKVEVDDGDWHEVVGSFRIEKQAKEIMLHVQGP | |||
| GH10 | 613 | 898 | 0 |
| QTRNSFPLGSCISRSNIDNKDFVDFFLNNFNWAVFGNELKWYWTEPEQGNFNYRDADEMLEFCERYNIETRGHCIFWEVESAIQPWVQQLSGSELEAAVE NRVTDLLTRYNGKFRHYDVNNEMLHGSFYRDRLGSDARAKMFKAAHELDPSATLFLNEYHIEDGFDSRSSPEKYIKLVHKLQKKGAPVGGIGIQGHITSP VGHIVRSALDKLSTLGLPIWFTELDVSSINEHIRGDDLEVMLWEAFAHPAVEGVMLWGFWELFMSREHAHLVNADGEVNEAGKRFL | |||
| Full Sequence |
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| Protein Sequence Length: 958 Download |
| MKPRLPSICS SGRDKWVDLE GTFSISNMPD RVVLYLEGPA PGKDLLIRSV TVRSSTTSDF 60 QYTKENTEAS SGFPPALNII KNHDFSDGLY SWNANSCDSF VVSSNDCNLE SYAVVNNRSE 120 TWQGLEQDIT DRVSPGCSYK VSASVSVSGP ILGSAQVLAT LRLEHQSSAT EYQGIGKIYA 180 SKDIWKTLEG TFLLSGRPDR VVFFLEGPSP GIDLLIKSVT IHCESDNQFE RSREFCPAPE 240 YDHIFLNSSF SDGLNHWSGR GCNLMLHESL ANGKILPHSG TCFASASERT HKWSGIEQDI 300 TERVQRKLIY EASSVVRLSH SHQTVQATLY VQYLDQREEY IGISSVQAQH DDWVQLKGKF 360 LLNGSPARAV VYIEGPPPGI DVFVDHFVVK PAEKDTPSRR PYTESHAFGM NIVSNSHLSD 420 GTIDGWFPLG NCHLKVGEGS PRILPPLARD SLTSTHGYLS GKYVLATNRS GTWMGPAQMI 480 TDRVELFLTY QVSAWVKIGS GGLTSSQDVN IALSVDGKWV NGGKVEVDDG DWHEVVGSFR 540 IEKQAKEIML HVQGPSPGVD LMVSGLQIFA VDHKLRLNYL RGQADVVRKR NVCLKFSGLD 600 PSELSGATVK IRQTRNSFPL GSCISRSNID NKDFVDFFLN NFNWAVFGNE LKWYWTEPEQ 660 GNFNYRDADE MLEFCERYNI ETRGHCIFWE VESAIQPWVQ QLSGSELEAA VENRVTDLLT 720 RYNGKFRHYD VNNEMLHGSF YRDRLGSDAR AKMFKAAHEL DPSATLFLNE YHIEDGFDSR 780 SSPEKYIKLV HKLQKKGAPV GGIGIQGHIT SPVGHIVRSA LDKLSTLGLP IWFTELDVSS 840 INEHIRGDDL EVMLWEAFAH PAVEGVMLWG FWELFMSREH AHLVNADGEV NEAGKRFLEM 900 KREWLTFVDG VIEDEGGLEF RGYHGSYTVE VVTSESKYVT NFVVDKGNSP IDVIINL* 960 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam02018 | CBM_4_9 | 1.0e-17 | 243 | 378 | 137 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
| pfam02018 | CBM_4_9 | 4.0e-22 | 78 | 210 | 135 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
| COG3693 | XynA | 3.0e-38 | 606 | 871 | 292 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| pfam00331 | Glyco_hydro_10 | 4.0e-79 | 616 | 899 | 304 | + Glycosyl hydrolase family 10. | ||
| smart00633 | Glyco_10 | 6.0e-85 | 651 | 897 | 268 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_172476.1 | 0 | 11 | 957 | 116 | 1063 | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein [Arabidopsis thaliana] |
| RefSeq | NP_172476.1 | 0 | 77 | 568 | 4 | 495 | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein [Arabidopsis thaliana] |
| RefSeq | XP_002301133.1 | 0 | 16 | 957 | 114 | 1049 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002301133.1 | 0 | 78 | 623 | 2 | 526 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002301133.1 | 0 | 242 | 568 | 1 | 314 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1i1x_A | 5e-28 | 641 | 839 | 39 | 241 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
| PDB | 1i1w_A | 5e-28 | 641 | 839 | 39 | 241 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 1xyz_B | 3e-27 | 582 | 871 | 2 | 307 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
| PDB | 1xyz_A | 3e-27 | 582 | 871 | 2 | 307 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
| PDB | 1tux_A | 6e-27 | 649 | 839 | 47 | 241 | A Chain A, High Resolution Crystal Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| GO850973 | 328 | 539 | 866 | 0 |
| GR184067 | 268 | 620 | 887 | 0 |
| EL428755 | 280 | 618 | 897 | 0 |
| DK547008 | 225 | 734 | 958 | 0 |
| EB442796 | 300 | 439 | 738 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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