| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10008228m |
| Family | GH2 |
| Protein Properties | Length: 945 Molecular Weight: 107257 Isoelectric Point: 5.9285 |
| Chromosome | Chromosome/Scaffold: 1 Start: 2970397 End: 2975150 |
| Description | glycoside hydrolase family 2 protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH2 | 38 | 749 | 0 |
| SDSRWMEAVVPGTVLGTLVKNKAVPDPFYGLENEAITDIADSGRDYYTFWFFTKFQCKRLLNQYVHLNFRAINYSAEVYVNGHKTLLPKGMFRRHTLDIT DILHSDNNFLAVIVHPPDHPGTIPPTGGQGGDHEIGKDVAAQYVEGWDWICPIRDRNTGIWDEVSISVTGPVRIIDPHLVSSFFDNYKRAYLHVTAELEN KSTWNAECSVTIQITAELENGVCLVEHLKTENVLIPAQGHIQHTFKPLFLYKPELWWPNGMGKQNLYDILITVSVKEFGESDSWMQPFGFRKIESVIDSA TGGRLFKINGEPIFIRGGNWILSDGLLRLSKERYRTDIKFHADMNMNMIRCWGGGLAERPDFYHFCDIYGLLVWQEFWITGDVDGRGVPVSNPNGPLDHD LFLFCARDTVKLLRNHPSLALWVGGNEQVPPKDINEALKQDLKLHPYFKTQMLSDADSDPSVYLDGSRVYIQGSMWDGFADGKGNFTDGPYEIQYPEDFF KDTYYNYGFNPEIGSVGMPVAATIRATMPPEGWEIPLFKKGLDGFVEEVPNRMWDYHKYIPYSKPGKVHDQILMYGVPENLDDFCLKAQLVNYIQYRALF EGWSSRMWTKYTGVLIWKNQNPWTGLRGQFYDHLLDQTASFYGCRSAAEPVHVQLNLASYFVEVVNTTSKELSDVAIEASVWDLDGNCPYSEVLKIDSAP PKKVVQVSEFKY | |||
| Full Sequence |
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| Protein Sequence Length: 945 Download |
| MAEIGKTVLD SGWLAARSTE VNVDGVQLTT TNPPALGSDS RWMEAVVPGT VLGTLVKNKA 60 VPDPFYGLEN EAITDIADSG RDYYTFWFFT KFQCKRLLNQ YVHLNFRAIN YSAEVYVNGH 120 KTLLPKGMFR RHTLDITDIL HSDNNFLAVI VHPPDHPGTI PPTGGQGGDH EIGKDVAAQY 180 VEGWDWICPI RDRNTGIWDE VSISVTGPVR IIDPHLVSSF FDNYKRAYLH VTAELENKST 240 WNAECSVTIQ ITAELENGVC LVEHLKTENV LIPAQGHIQH TFKPLFLYKP ELWWPNGMGK 300 QNLYDILITV SVKEFGESDS WMQPFGFRKI ESVIDSATGG RLFKINGEPI FIRGGNWILS 360 DGLLRLSKER YRTDIKFHAD MNMNMIRCWG GGLAERPDFY HFCDIYGLLV WQEFWITGDV 420 DGRGVPVSNP NGPLDHDLFL FCARDTVKLL RNHPSLALWV GGNEQVPPKD INEALKQDLK 480 LHPYFKTQML SDADSDPSVY LDGSRVYIQG SMWDGFADGK GNFTDGPYEI QYPEDFFKDT 540 YYNYGFNPEI GSVGMPVAAT IRATMPPEGW EIPLFKKGLD GFVEEVPNRM WDYHKYIPYS 600 KPGKVHDQIL MYGVPENLDD FCLKAQLVNY IQYRALFEGW SSRMWTKYTG VLIWKNQNPW 660 TGLRGQFYDH LLDQTASFYG CRSAAEPVHV QLNLASYFVE VVNTTSKELS DVAIEASVWD 720 LDGNCPYSEV LKIDSAPPKK VVQVSEFKYP KAENPKQVYF LLLKMYNVSD KMVISRNFYW 780 LHLPGQDYTL LEPYRKKQIP LKITCNTVMV GPKYELEISV HNTSRADLAK NVIQEDGKRN 840 MGLLQKLFSR CIVSADSNRA FKVVEMEGSD SGVAFFLRFS VHNAESETQD TRILPVHYSD 900 NYFSLVPGES MSFKISFAAP TGIKKSPRVM LQGWNYPDGF SVFG* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK10150 | PRK10150 | 4.0e-6 | 22 | 464 | 478 | + beta-D-glucuronidase; Provisional | ||
| PRK09525 | lacZ | 4.0e-7 | 135 | 464 | 357 | + beta-D-galactosidase; Reviewed | ||
| pfam00703 | Glyco_hydro_2 | 5.0e-12 | 209 | 328 | 120 | + Glycosyl hydrolases family 2. This family contains beta-galactosidase, beta-mannosidase and beta-glucuronidase activities. | ||
| PRK10340 | ebgA | 5.0e-16 | 98 | 464 | 381 | + cryptic beta-D-galactosidase subunit alpha; Reviewed | ||
| COG3250 | LacZ | 1.0e-37 | 60 | 464 | 410 | + Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism] | ||
| Gene Ontology | |
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| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAO27794.1 | 0 | 1 | 939 | 1 | 971 | glycosyl hydrolase [Gossypium hirsutum] |
| DDBJ | BAE97370.1 | 0 | 1 | 944 | 1 | 946 | endo-beta-mannosidase [Brassica oleracea] |
| RefSeq | NP_563833.2 | 0 | 1 | 944 | 1 | 944 | glycoside hydrolase family 2 protein [Arabidopsis thaliana] |
| RefSeq | XP_002319539.1 | 0 | 1 | 943 | 1 | 973 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002512381.1 | 0 | 1 | 943 | 1 | 973 | beta-mannosidase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2vzo_B | 0 | 40 | 935 | 79 | 890 | A Chain A, Crystal Structure Of Amycolatopsis Orientalis Exo- Chitosanase Csxa |
| PDB | 2vzo_A | 0 | 40 | 935 | 79 | 890 | A Chain A, Crystal Structure Of Amycolatopsis Orientalis Exo- Chitosanase Csxa |
| PDB | 2x09_B | 0 | 40 | 935 | 79 | 890 | A Chain A, Crystal Structure Of Amycolatopsis Orientalis Exo- Chitosanase Csxa |
| PDB | 2x09_A | 0 | 40 | 935 | 79 | 890 | A Chain A, Crystal Structure Of Amycolatopsis Orientalis Exo- Chitosanase Csxa |
| PDB | 2x05_B | 0 | 40 | 935 | 79 | 890 | A Chain A, Crystal Structure Of Amycolatopsis Orientalis Exo- Chitosanase Csxa |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| ES793920 | 360 | 372 | 726 | 0 |
| GO871600 | 333 | 300 | 624 | 0 |
| ES832790 | 305 | 490 | 794 | 0 |
| GO847639 | 324 | 509 | 832 | 0 |
| GO848159 | 317 | 169 | 485 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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