| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10008366m |
| Family | CBM57 |
| Protein Properties | Length: 771 Molecular Weight: 85469.4 Isoelectric Point: 9.3068 |
| Chromosome | Chromosome/Scaffold: 1 Start: 2437890 End: 2444815 |
| Description | Leucine-rich repeat transmembrane protein kinase |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CBM57 | 417 | 586 | 8.1e-31 |
| YINCGGGEVKVDKGKIYQADDEPKGASMFFTSADKHWALSSTGNFMDNDDDADDYTVQNTSRLSVNSSSLSFGLYRTARVSPLSLTYYGLCLGNGNYTVN LHFAEIIFTDDNTLYSLGKRLFDIYVQDQLVMKNFNIQEAARGSGKPVTKSFLVNVTDHTLKIGLRWAGK | |||
| Full Sequence |
|---|
| Protein Sequence Length: 771 Download |
| MIPLHRIYFI IVLFTLILHG RIGSSDNTKL HEAEVRALKE IGKKIGKKDW NFNKDPCSGE 60 GNWVDTSFTT KEFESNITCD CSYPPPNSSC HVIRIALKSQ NLSGIVPPEF SKLRHLKVLD 120 LSRNSLTGTI PKEWASMRLE DLSFMGNRLS GPFPKVLTRL TTLRNLSLEG NQFSGPIPPE 180 IAKLTHLEKL HLPSNAFTGP LTEKLGLLKN ITDMRLSDNN FTGPVPNFIG NWTRIVKLQM 240 HGCGLDGPIP SSISTLTSLS DLRISDLGGK PSSFPPLSNL KSIKSLILRR CNLNGPIPKY 300 IGDMDKLKTL DLSFNLLSGE IPSSFENMKK ADFIYLTGNK LTGGVPKYFV EINKNVDVSY 360 NNFTDESSIP NNGECNRVTS NLVESFATRN KSQKGSTCFL QRIPCVHPKK DHIYKLYINC 420 GGGEVKVDKG KIYQADDEPK GASMFFTSAD KHWALSSTGN FMDNDDDADD YTVQNTSRLS 480 VNSSSLSFGL YRTARVSPLS LTYYGLCLGN GNYTVNLHFA EIIFTDDNTL YSLGKRLFDI 540 YVQDQLVMKN FNIQEAARGS GKPVTKSFLV NVTDHTLKIG LRWAGKGTTG IPIRGVYGPM 600 ISAISVEPNF KPPVYYDVKA IIIKVGLPVA AATLLLFIIV GVLWKKRHDK NAIDKELRGL 660 DLQTGTFTLR QIKAATDNFD VTKKIGEGGF GSVYKGELPE GKLIAVKQLS AKSRQGNREF 720 VNEIGMISAL QHPNLVKLYG CCVEGNQLIL VYEYLENNCL SRALFGMFFF * 780 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN00113 | PLN00113 | 1.0e-24 | 95 | 371 | 281 | + leucine-rich repeat receptor-like protein kinase; Provisional | ||
| PLN00113 | PLN00113 | 9.0e-26 | 101 | 370 | 299 | + leucine-rich repeat receptor-like protein kinase; Provisional | ||
| PLN00113 | PLN00113 | 7.0e-27 | 3 | 370 | 375 | + leucine-rich repeat receptor-like protein kinase; Provisional | ||
| PLN00113 | PLN00113 | 2.0e-28 | 95 | 346 | 253 | + leucine-rich repeat receptor-like protein kinase; Provisional | ||
| pfam11721 | Malectin | 3.0e-52 | 414 | 604 | 193 | + Di-glucose binding within endoplasmic reticulum. Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004672 | protein kinase activity |
| GO:0005515 | protein binding |
| GO:0005524 | ATP binding |
| GO:0006468 | protein phosphorylation |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_172244.2 | 0 | 1 | 766 | 1 | 765 | leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] |
| RefSeq | XP_002278131.1 | 0 | 11 | 766 | 6 | 756 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002306015.1 | 0 | 35 | 766 | 1 | 729 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002532988.1 | 0.006 | 82 | 174 | 183 | 274 | conserved hypothetical protein [Ricinus communis] |
| RefSeq | XP_002532988.1 | 0 | 96 | 766 | 6 | 671 | conserved hypothetical protein [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3rj0_A | 1e-23 | 88 | 375 | 241 | 534 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 3rj0_A | 2e-23 | 94 | 366 | 179 | 478 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 3rj0_A | 4e-23 | 94 | 374 | 395 | 722 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 3rj0_A | 5e-16 | 100 | 340 | 325 | 571 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 3rj0_A | 0.000000000005 | 49 | 427 | 29 | 407 | A Chain A, Pectin Methylesterase From Carrot |
