Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10008371m |
Family | GH3 |
Protein Properties | Length: 769 Molecular Weight: 82969.9 Isoelectric Point: 8.6701 |
Chromosome | Chromosome/Scaffold: 1 Start: 582604 End: 586451 |
Description | beta-xylosidase 2 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH3 | 76 | 323 | 0 |
AAIPRLGIKGYEWWSEALHGVSNVGPGTKFGGVYPAATSFPQVITTVASFNASLWESIGRVVSNEARAMYNGGVGGLTYWSPNVNILRDPRWGRGQETPG EDPVVAGKYAAAYVRGLQGNDRSRLKVAACCKHFTAYDLDNWNGVDRFHFNAKVSKQDIEDTFDVPFRMCVKEGNVASIMCSYNQVNGVPTCADPNLLKK TIRNQWGLNGYIVSDCDSVGVLYDTQHYTGTPEEAAADSIKAGLDLDC |
Full Sequence |
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Protein Sequence Length: 769 Download |
MILHKMAFLA AVLLFLISSS SVRVHCRETF ACDTKDAATA TLRFCQMSVP IPERVRDLIG 60 RLTLAEKVSL LGNTAAAIPR LGIKGYEWWS EALHGVSNVG PGTKFGGVYP AATSFPQVIT 120 TVASFNASLW ESIGRVVSNE ARAMYNGGVG GLTYWSPNVN ILRDPRWGRG QETPGEDPVV 180 AGKYAAAYVR GLQGNDRSRL KVAACCKHFT AYDLDNWNGV DRFHFNAKVS KQDIEDTFDV 240 PFRMCVKEGN VASIMCSYNQ VNGVPTCADP NLLKKTIRNQ WGLNGYIVSD CDSVGVLYDT 300 QHYTGTPEEA AADSIKAGLD LDCGPFLGAH TVDAVKKNLL RESDVDNALV NTLTVQMRLG 360 MFDGDIVGKP YGHLGPAHVC TPVHKGLALE AAHQGIVLLK NRGSSLPLSQ HRHRTIAVIG 420 PNSDATVTMI GNYAGIACGY TSPVQGITGY ARTIHQKGCA DVHCMDDRLF NAADEAARGA 480 DATVLVMGLD QSIEAEFKDR NSLLLPGKQR ELISRVAKAS KGPVILVLMS GGPIDISFAE 540 KDRRISAILW AGYPGQEGGT AIADILFGSA NPGGKLPMTW YPQDYLTNLP MTEMSMRPVH 600 SKQIPGRTYR FYDGPVVYPF GHGLSYTRFT HSIADAPKVI AIAVRGRNST VSGKSVRVTH 660 ARCNGLSLGV HVDVTNVGSR DGTHTMLVFS APPGGEWAPK KQLVAFERVH VAVGEKKRVQ 720 VNIHVCKYLS VVDRAGNRRI PIGDHGIHIG DESHTVSLQA STLGVIKS* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam01915 | Glyco_hydro_3_C | 2.0e-58 | 396 | 628 | 240 | + Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933. | ||
COG1472 | BglX | 1.0e-59 | 75 | 459 | 390 | + Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] | ||
pfam00933 | Glyco_hydro_3 | 2.0e-64 | 58 | 355 | 304 | + Glycosyl hydrolase family 3 N terminal domain. | ||
PRK15098 | PRK15098 | 7.0e-82 | 113 | 723 | 668 | + beta-D-glucoside glucohydrolase; Provisional | ||
PLN03080 | PLN03080 | 0 | 4 | 760 | 781 | + Probable beta-xylosidase; Provisional |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAG10624.1 | 0 | 6 | 768 | 1 | 763 | AC022521_2 Similar to xylosidase [Arabidopsis thaliana] |
RefSeq | NP_563659.1 | 0 | 1 | 768 | 1 | 768 | BXL2 (BETA-XYLOSIDASE 2); hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] |
RefSeq | XP_002270249.1 | 0 | 10 | 768 | 9 | 768 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002316021.1 | 0 | 24 | 768 | 22 | 768 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515300.1 | 0 | 28 | 768 | 26 | 768 | Beta-glucosidase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3u48_B | 0 | 113 | 723 | 91 | 696 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
PDB | 3u48_A | 0 | 113 | 723 | 91 | 696 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
PDB | 3u4a_B | 0 | 113 | 723 | 91 | 696 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
PDB | 3u4a_A | 0 | 113 | 723 | 91 | 696 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
PDB | 2x41_A | 5.04467e-44 | 53 | 761 | 2 | 710 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |