| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10008508m |
| Family | PL4 |
| Protein Properties | Length: 672 Molecular Weight: 76368.1 Isoelectric Point: 6.6448 |
| Chromosome | Chromosome/Scaffold: 1 Start: 3290180 End: 3296859 |
| Description | Rhamnogalacturonate lyase family protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL4 | 43 | 653 | 0 |
| SQGVKLHIHDRYVVLDNGILQVTLSNPGGIITGIKYNGVDNVLEVRNKETNRGYWDLHWNEPGGKGIFDVISGVSFRVIVETEEQVEISFVRTWDPSLEG KYIPLNIDKRFIMLRGSSGVYSYGIYEHLKDWPGFELGETRIAFKLRKDKFHYMAVADDRKRIMPFPDDLCKGRCQTLDYQEASLLTTPCDPRLQGEVDD KYQYSCENQDLRVHGWISFDPPIGFWQITPSNEFRSGGPLKQNLTSHVGPTTLAVFHSTHYAGKTMMPRFEQGEPWKKVYGPVFIYLNSTPHGDDPLCLW DDAKIKMMAEVESWPYSFVASEEYPKSDERGTARGRLLIRDRFISNDLISAGGAYVGLAPPGGSGSWQIECKGYQFWAVGDEAGYFSIGNVRPGEYNLYA WVPGFIGDYHDGKIVSVTSGGKIELGDIIYEPPRDGPTLWDIGIPDRKASEFFIPDPDPALVNRAFVHHQDRFRQYGLWNRYTDLYPNDDLVYTVGVSDY RRDWFFAQVPRKKGDGQEGTTWQISFKLENIDQKANYKLRIAIASATLAELQIRVNDAEAVRPLFTTGLIGRDNSIARHGIHGVYMLYEVNIPGNRVVQG DNTIFLRQPRC | |||
| Full Sequence |
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| Protein Sequence Length: 672 Download |
| MKRLADRLLH RFTNHETALN AGHRWTDQGT SGPSHRKDNR MSSQGVKLHI HDRYVVLDNG 60 ILQVTLSNPG GIITGIKYNG VDNVLEVRNK ETNRGYWDLH WNEPGGKGIF DVISGVSFRV 120 IVETEEQVEI SFVRTWDPSL EGKYIPLNID KRFIMLRGSS GVYSYGIYEH LKDWPGFELG 180 ETRIAFKLRK DKFHYMAVAD DRKRIMPFPD DLCKGRCQTL DYQEASLLTT PCDPRLQGEV 240 DDKYQYSCEN QDLRVHGWIS FDPPIGFWQI TPSNEFRSGG PLKQNLTSHV GPTTLAVFHS 300 THYAGKTMMP RFEQGEPWKK VYGPVFIYLN STPHGDDPLC LWDDAKIKMM AEVESWPYSF 360 VASEEYPKSD ERGTARGRLL IRDRFISNDL ISAGGAYVGL APPGGSGSWQ IECKGYQFWA 420 VGDEAGYFSI GNVRPGEYNL YAWVPGFIGD YHDGKIVSVT SGGKIELGDI IYEPPRDGPT 480 LWDIGIPDRK ASEFFIPDPD PALVNRAFVH HQDRFRQYGL WNRYTDLYPN DDLVYTVGVS 540 DYRRDWFFAQ VPRKKGDGQE GTTWQISFKL ENIDQKANYK LRIAIASATL AELQIRVNDA 600 EAVRPLFTTG LIGRDNSIAR HGIHGVYMLY EVNIPGNRVV QGDNTIFLRQ PRCNGPFQGI 660 MYDYIRLEGP S* 720 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd10316 | RGL4_M | 6.0e-28 | 371 | 470 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10317 | RGL4_C | 2.0e-48 | 482 | 668 | 189 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10320 | RGL4_N | 2.0e-83 | 46 | 341 | 302 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| pfam06045 | Rhamnogal_lyase | 4.0e-104 | 33 | 240 | 208 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAB60743.1 | 0 | 41 | 670 | 1 | 726 | F21M12.30 gene product [Arabidopsis thaliana] |
| RefSeq | NP_172462.2 | 0 | 1 | 670 | 1 | 673 | lyase [Arabidopsis thaliana] |
| RefSeq | XP_002306520.1 | 0 | 57 | 670 | 1 | 615 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002527352.1 | 0 | 41 | 671 | 1 | 632 | lyase, putative [Ricinus communis] |
| RefSeq | XP_002527353.1 | 0 | 41 | 670 | 1 | 633 | lyase, putative [Ricinus communis] |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| HO206588 | 225 | 161 | 385 | 0 |
| DK517187 | 238 | 432 | 669 | 0 |
| DW479599 | 295 | 40 | 331 | 0 |
| EG452795 | 224 | 447 | 670 | 0 |
| DW479600 | 295 | 40 | 331 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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