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Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10008583m |
Family | GH3 |
Protein Properties | Length: 626 Molecular Weight: 67578 Isoelectric Point: 8.462 |
Chromosome | Chromosome/Scaffold: 1 Start: 583580 End: 586451 |
Description | beta-xylosidase 2 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH3 | 6 | 180 | 0 |
VGGLTYWSPNVNILRDPRWGRGQETPGEDPVVAGKYAAAYVRGLQGNDRSRLKVAACCKHFTAYDLDNWNGVDRFHFNAKVSKQDIEDTFDVPFRMCVKE GNVASIMCSYNQVNGVPTCADPNLLKKTIRNQWGLNGYIVSDCDSVGVLYDTQHYTGTPEEAAADSIKAGLDLDC |
Full Sequence |
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Protein Sequence Length: 626 Download |
MYNGGVGGLT YWSPNVNILR DPRWGRGQET PGEDPVVAGK YAAAYVRGLQ GNDRSRLKVA 60 ACCKHFTAYD LDNWNGVDRF HFNAKVSKQD IEDTFDVPFR MCVKEGNVAS IMCSYNQVNG 120 VPTCADPNLL KKTIRNQWGL NGYIVSDCDS VGVLYDTQHY TGTPEEAAAD SIKAGLDLDC 180 GPFLGAHTVD AVKKNLLRES DVDNALVNTL TVQMRLGMFD GDIVGKPYGH LGPAHVCTPV 240 HKGLALEAAH QGIVLLKNRG SSLPLSQHRH RTIAVIGPNS DATVTMIGNY AGIACGYTSP 300 VQGITGYART IHQKGCADVH CMDDRLFNAA DEAARGADAT VLVMGLDQSI EAEFKDRNSL 360 LLPGKQRELI SRVAKASKGP VILVLMSGGP IDISFAEKDR RISAILWAGY PGQEGGTAIA 420 DILFGSANPG GKLPMTWYPQ DYLTNLPMTE MSMRPVHSKQ IPGRTYRFYD GPVVYPFGHG 480 LSYTRFTHSI ADAPKVIAIA VRGRNSTVSG KSVRVTHARC NGLSLGVHVD VTNVGSRDGT 540 HTMLVFSAPP GGEWAPKKQL VAFERVHVAV GEKKRVQVNI HVCKYLSVVD RAGNRRIPIG 600 DHGIHIGDES HTVSLQASTL GVIKS* 660 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG1472 | BglX | 1.0e-51 | 6 | 316 | 316 | + Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] | ||
pfam00933 | Glyco_hydro_3 | 4.0e-54 | 11 | 212 | 205 | + Glycosyl hydrolase family 3 N terminal domain. | ||
pfam01915 | Glyco_hydro_3_C | 7.0e-59 | 253 | 485 | 240 | + Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933. | ||
PRK15098 | PRK15098 | 3.0e-80 | 12 | 580 | 625 | + beta-D-glucoside glucohydrolase; Provisional | ||
PLN03080 | PLN03080 | 0 | 1 | 617 | 639 | + Probable beta-xylosidase; Provisional |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAG10624.1 | 0 | 1 | 625 | 139 | 763 | AC022521_2 Similar to xylosidase [Arabidopsis thaliana] |
RefSeq | NP_563659.1 | 0 | 1 | 625 | 144 | 768 | BXL2 (BETA-XYLOSIDASE 2); hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] |
RefSeq | XP_002270249.1 | 0 | 1 | 625 | 143 | 768 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002316021.1 | 0 | 1 | 625 | 142 | 768 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515300.1 | 0 | 1 | 625 | 142 | 768 | Beta-glucosidase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3u48_B | 0 | 12 | 580 | 128 | 696 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
PDB | 3u48_A | 0 | 12 | 580 | 128 | 696 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
PDB | 3u4a_B | 0 | 12 | 580 | 128 | 696 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
PDB | 3u4a_A | 0 | 12 | 580 | 128 | 696 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
PDB | 4i8d_B | 7.00005e-41 | 20 | 622 | 120 | 713 | A Chain A, Crystal Structure Of Beta-D-Glucoside Glucohydrolase From Trichoderma Reesei |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EX118302 | 312 | 150 | 461 | 0 |
EX117893 | 279 | 121 | 399 | 0 |
DY274096 | 315 | 56 | 370 | 0 |
FC889191 | 308 | 56 | 363 | 0 |
EX117923 | 276 | 318 | 593 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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