| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10008624m |
| Family | GT5 |
| Protein Properties | Length: 605 Molecular Weight: 66373.8 Isoelectric Point: 8.5485 |
| Chromosome | Chromosome/Scaffold: 1 Start: 11586244 End: 11589444 |
| Description | UDP-Glycosyltransferase superfamily protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GT5 | 81 | 576 | 0 |
| VFIGAEVGPWSKTGGLGDVLGGLPPALAARGHRVMTICPRYDQYKDAWDTCVVVQIQIGDKVENVRFFHCYKRGVDRVFVDHPIFLAKVVGKTGSKIYGP ITGVDYNDNQLRFSLLCQAALEAPQVLNLNSNKYFSGPYGEDVVFVANDWHTALLPCYLKSMYQSRGVYMNAKVVFCIHNIAYQGRFAFDDYSLLNLPTS FKSSFDFMDGYEKPVKGRKINWMKAAILEADRVLTVSPYYAQELISGIDRGVELHTYLRMKTVSGIINGMDVQEWNPSTDKYIDIKYDITTVTDAKPLIK EALQAAVGLPIDRDVPVIGFIGRLEEQKGSDILVEAISKFMGLNVQMVILGTGKKKMEAQILELEEKFPGKAVGVAKFNVPLAHMITAGADFIIVPSRFE PCGLIQLHAMRYGTVPIVASTGGLVDTVKDGYTGFHIGRFNVKCEVVDPEDVIATAKAVTRAVAVYGTSAMKEMVKNCMDQDFSWKGPARLWEKVL | |||
| Full Sequence |
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| Protein Sequence Length: 605 Download |
| MATVTASSHF VSRTSLFNNN GVSSGSDLSQ ITLKGQSMTH CGLRSFNLVD RLQRRSQAKP 60 VSAKKKAPKA KIVCEKGMSL VFIGAEVGPW SKTGGLGDVL GGLPPALAAR GHRVMTICPR 120 YDQYKDAWDT CVVVQIQIGD KVENVRFFHC YKRGVDRVFV DHPIFLAKVV GKTGSKIYGP 180 ITGVDYNDNQ LRFSLLCQAA LEAPQVLNLN SNKYFSGPYG EDVVFVANDW HTALLPCYLK 240 SMYQSRGVYM NAKVVFCIHN IAYQGRFAFD DYSLLNLPTS FKSSFDFMDG YEKPVKGRKI 300 NWMKAAILEA DRVLTVSPYY AQELISGIDR GVELHTYLRM KTVSGIINGM DVQEWNPSTD 360 KYIDIKYDIT TVTDAKPLIK EALQAAVGLP IDRDVPVIGF IGRLEEQKGS DILVEAISKF 420 MGLNVQMVIL GTGKKKMEAQ ILELEEKFPG KAVGVAKFNV PLAHMITAGA DFIIVPSRFE 480 PCGLIQLHAM RYGTVPIVAS TGGLVDTVKD GYTGFHIGRF NVKCEVVDPE DVIATAKAVT 540 RAVAVYGTSA MKEMVKNCMD QDFSWKGPAR LWEKVLLSLN VAGSEAGIEG EEIAPLAKEN 600 VATP* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK14099 | PRK14099 | 3.0e-83 | 174 | 579 | 413 | + glycogen synthase; Provisional | ||
| COG0297 | GlgA | 7.0e-100 | 78 | 569 | 509 | + Glycogen synthase [Carbohydrate transport and metabolism] | ||
| PRK00654 | glgA | 2.0e-124 | 78 | 570 | 503 | + glycogen synthase; Provisional | ||
| TIGR02095 | glgA | 4.0e-161 | 78 | 579 | 508 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
| cd03791 | GT1_Glycogen_synthase_DULL1_like | 1.0e-166 | 81 | 576 | 509 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0009058 | biosynthetic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PRF/SEQDB | 0 | 1 | 604 | 1 | 607 | UP10_LACSN Unknown protein 10 from 2D-PAGE | |
| GenBank | ACJ11751.1 | 0 | 1 | 604 | 1 | 609 | granule bound starch synthase [Gossypium hirsutum] |
| GenBank | ACV72639.1 | 0 | 1 | 604 | 1 | 609 | granule-bound starch synthase 1 [Gossypium hirsutum] |
| RefSeq | NP_174566.1 | 0 | 1 | 604 | 1 | 610 | starch synthase, putative [Arabidopsis thaliana] |
| RefSeq | XP_002300507.1 | 0 | 1 | 604 | 1 | 610 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3vuf_A | 0 | 78 | 604 | 10 | 536 | A Chain A, Crystal Structure Of The Nasturtium Seedling Mutant Xyloglucanase Isoform Nxg1-Delta-Yniig |
| PDB | 3vue_A | 0 | 78 | 604 | 10 | 536 | A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I Catalytic Domain |
| PDB | 3d1j_A | 0 | 78 | 580 | 1 | 477 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 3guh_A | 0 | 78 | 581 | 1 | 478 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4u_A | 0 | 78 | 581 | 1 | 478 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| AJ568414 | 610 | 1 | 605 | 0 |
| CN831271 | 382 | 224 | 605 | 0 |
| HO825853 | 518 | 86 | 603 | 0 |
| HO629148 | 576 | 33 | 605 | 0 |
| HO778340 | 376 | 72 | 445 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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