| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10008651m |
| Family | GH47 |
| Protein Properties | Length: 596 Molecular Weight: 68246.8 Isoelectric Point: 6.7842 |
| Chromosome | Chromosome/Scaffold: 1 Start: 9394806 End: 9400027 |
| Description | Glycosyl hydrolase family 47 protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH47 | 65 | 498 | 0 |
| MFYHAYDNYMTYAFPHDELKPLTKSFTDSLSELGNLKLEHLPTDYNGSAVTLVESLSSLAILGNSSEFEKGVHWLSDNLTFDIDARVNLFECNIRVLGGL ISAHLLAIDPTNRLIQGSYNNQLLRLAEDLGKRFLPAFETPTGLPYAWINLKNGVMENETTETSTSGCGSLILEMGALSRLTGDPRFESAALRALRQLWR MRSSLDLLGTTLDVVTGEWLEYSSSIGAGVDSFYEYLLKAYILFGKEDYWRMFSSAYLASQKYFRHGPWYHEANMWSGKPTYWQLTSLQAFWPGLQVLTG DIAAANSSHREFFHVWEKFGVLPERYLLDHQMIHPTMKYYPLRPELAESTFYLYQATKDPWYLDVGETMVKSLNLYTKVPGGFASVRDVTTMQLEDHQHS FFLAETCKYLYLLFDDSFVAKRNYIFTTEGHPIQ | |||
| Full Sequence |
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| Protein Sequence Length: 596 Download |
| MHKFLSCSSD WFLSYTELIM SCNLHPKKRL FLCLLLCLAF FVVDSSSQQH LEVKKKLMRE 60 KVREMFYHAY DNYMTYAFPH DELKPLTKSF TDSLSELGNL KLEHLPTDYN GSAVTLVESL 120 SSLAILGNSS EFEKGVHWLS DNLTFDIDAR VNLFECNIRV LGGLISAHLL AIDPTNRLIQ 180 GSYNNQLLRL AEDLGKRFLP AFETPTGLPY AWINLKNGVM ENETTETSTS GCGSLILEMG 240 ALSRLTGDPR FESAALRALR QLWRMRSSLD LLGTTLDVVT GEWLEYSSSI GAGVDSFYEY 300 LLKAYILFGK EDYWRMFSSA YLASQKYFRH GPWYHEANMW SGKPTYWQLT SLQAFWPGLQ 360 VLTGDIAAAN SSHREFFHVW EKFGVLPERY LLDHQMIHPT MKYYPLRPEL AESTFYLYQA 420 TKDPWYLDVG ETMVKSLNLY TKVPGGFASV RDVTTMQLED HQHSFFLAET CKYLYLLFDD 480 SFVAKRNYIF TTEGHPIQVV SSWHEKLPKN YISGNWTLSK RGEWEGRASA LSLQVCPSIA 540 LNSRRPEQHR ESACHVPDEK TNHRCWSNKE CGVDATTCRQ RSCSGVGYCG LWNPL* 600 |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| PTZ00470 | PTZ00470 | 9.0e-79 | 59 | 499 | 477 | + glycoside hydrolase family 47 protein; Provisional |
| pfam01532 | Glyco_hydro_47 | 3.0e-147 | 65 | 497 | 470 | + Glycosyl hydrolase family 47. Members of this family are alpha-mannosidases that catalyze the hydrolysis of the terminal 1,2-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide Man(9)(GlcNAc)(2). |
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004571 | mannosyl-oligosaccharide 1,2-alpha-mannosidase activity |
| GO:0005509 | calcium ion binding |
| GO:0016020 | membrane |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_564288.1 | 0 | 20 | 595 | 1 | 574 | glycoside hydrolase family 47 protein [Arabidopsis thaliana] |
| RefSeq | XP_002280345.1 | 0 | 32 | 592 | 11 | 570 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002318019.1 | 0 | 58 | 592 | 1 | 527 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002321565.1 | 0 | 29 | 592 | 7 | 564 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002511454.1 | 0 | 30 | 592 | 15 | 572 | Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nxc_A | 0 | 59 | 500 | 21 | 466 | A Chain A, Structure Of Mouse Golgi Alpha-1,2-Mannosidase Ia Reveals The Molecular Basis For Substrate Specificity Among Class I Enzymes (Family 47 Glycosidases) |
| PDB | 4ayr_A | 0 | 56 | 481 | 11 | 416 | A Chain A, Structure Of Mouse Golgi Alpha-1,2-Mannosidase Ia Reveals The Molecular Basis For Substrate Specificity Among Class I Enzymes (Family 47 Glycosidases) |
| PDB | 4ayq_A | 0 | 56 | 481 | 11 | 416 | A Chain A, Structure Of Mouse Golgi Alpha-1,2-Mannosidase Ia Reveals The Molecular Basis For Substrate Specificity Among Class I Enzymes (Family 47 Glycosidases) |
| PDB | 4ayp_A | 0 | 56 | 481 | 11 | 416 | A Chain A, Structure Of Mouse Golgi Alpha-1,2-Mannosidase Ia Reveals The Molecular Basis For Substrate Specificity Among Class I Enzymes (Family 47 Glycosidases) |
| PDB | 4ayo_A | 0 | 56 | 481 | 11 | 416 | A Chain A, Structure Of The Gh47 Processing Alpha-1,2-mannosidase From Caulobacter Strain K31 |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EX133694 | 253 | 344 | 596 | 0 |
| CO107815 | 277 | 287 | 563 | 0 |
| CJ683637 | 276 | 231 | 506 | 0 |
| EL371840 | 267 | 231 | 497 | 0 |
| EL481589 | 266 | 231 | 496 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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