Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10008670m |
Family | CE8 |
Protein Properties | Length: 587 Molecular Weight: 64431.1 Isoelectric Point: 6.7899 |
Chromosome | Chromosome/Scaffold: 1 Start: 18941126 End: 18944141 |
Description | pectin methylesterase 1 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 280 | 571 | 0 |
DVTVAADGTGDVKTVNEAVLMVPKKSLKMFVIYVKSGTYNENVVMDKSKWNVMIYGDGKGKTIISGSKNFIDGTPTYETATFAIQGKGFVMKDIGIINTS GATKHQAVAFRSGSDFSVYYQCSFDGFQDTLYPHSNRQFYRDCDVTGTIDFIFGSAAVVFQGCKIMPRQPLPNQFNTITAQGKKDPNQNSGMSIQRCTIS ANGNVIAPTYLGRPWKEFSTTVIMETEIGPVVRPIGWMSWVSGVDPPASIVYGEYKNTGPGSDVTQRVKWAGYKSVMSDEDAAKFTVATLLH |
Full Sequence |
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Protein Sequence Length: 587 Download |
MDSVNSFKGY GKVDEAQDLA LKKKTRKRIL LLTISVVVLV AVIIAAVIAT VVHNKNDESA 60 PGSPHELTPS TSLKTICSVT RFPESCISSI SKLPSSNTTD PETLFKLSLR VIIDELDSIS 120 DLPEKLSKET EDERIKSALR VCGDLIEDAL DRLNDTVSAI DDTEKKTLSS SKIEDLKTWL 180 SATVTDHDTC FDSLDELKQN KTEYANSTII HNLKSAMGNS TEFTSNSLAI VSKILAALSD 240 LGIPIHRRRR LMSHHHQQQS EDFEEWARRR LLQTEGAKPD VTVAADGTGD VKTVNEAVLM 300 VPKKSLKMFV IYVKSGTYNE NVVMDKSKWN VMIYGDGKGK TIISGSKNFI DGTPTYETAT 360 FAIQGKGFVM KDIGIINTSG ATKHQAVAFR SGSDFSVYYQ CSFDGFQDTL YPHSNRQFYR 420 DCDVTGTIDF IFGSAAVVFQ GCKIMPRQPL PNQFNTITAQ GKKDPNQNSG MSIQRCTISA 480 NGNVIAPTYL GRPWKEFSTT VIMETEIGPV VRPIGWMSWV SGVDPPASIV YGEYKNTGPG 540 SDVTQRVKWA GYKSVMSDED AAKFTVATLL HGSDWIPATG VTHQLS* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02201 | PLN02201 | 2.0e-147 | 101 | 583 | 492 | + probable pectinesterase/pectinesterase inhibitor | ||
PLN02713 | PLN02713 | 5.0e-153 | 138 | 581 | 468 | + Probable pectinesterase/pectinesterase inhibitor | ||
PLN02468 | PLN02468 | 6.0e-179 | 7 | 584 | 583 | + putative pectinesterase/pectinesterase inhibitor | ||
pfam01095 | Pectinesterase | 1.0e-180 | 280 | 573 | 299 | + Pectinesterase. | ||
PLN02314 | PLN02314 | 0 | 1 | 586 | 590 | + pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0004857 | enzyme inhibitor activity |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAM65650.1 | 0 | 1 | 586 | 1 | 586 | pectinesterase, putative [Arabidopsis thaliana] |
RefSeq | NP_175787.1 | 0 | 1 | 586 | 1 | 586 | ATPME1; pectinesterase [Arabidopsis thaliana] |
RefSeq | XP_002265217.1 | 0 | 1 | 586 | 1 | 577 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002304256.1 | 0 | 1 | 584 | 1 | 585 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002532945.1 | 0 | 1 | 582 | 1 | 584 | Pectinesterase-3 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1xg2_A | 0 | 280 | 583 | 4 | 311 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1gq8_A | 0 | 279 | 579 | 7 | 311 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 2ntq_B | 5e-17 | 292 | 577 | 19 | 339 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 2ntq_A | 5e-17 | 292 | 577 | 19 | 339 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 2ntp_B | 5e-17 | 292 | 577 | 19 | 339 | A Chain A, Pectin Methylesterase From Carrot |