| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10008673m |
| Family | CE8 |
| Protein Properties | Length: 585 Molecular Weight: 63657.4 Isoelectric Point: 9.5713 |
| Chromosome | Chromosome/Scaffold: 1 Start: 18938264 End: 18940650 |
| Description | pectin methylesterase 2 |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 274 | 568 | 0 |
| ATVAADGSGDFKTIVAAVAAAPEKSSKRFVIHIKAGVYRENVEVSKKKKNIMFLGDGRGKTIITASRNVVDGSTTFHSATVAAVGEGFLARDITFQNTAG PSKHQAVALRVGSDFSAFYNCDMLAYQDTLYVHSNRQFFVKCHIVGTVDFIFGNAAAVLQDCDINARKPNSGQKNMVTAQGRSDPNQNTGIVIQNSRIGG TPDLSAVKGTFPTYLGRPWKQYSRTVIMQSAISDVIRPEGWHEWSGSFALDTLTYREYLNRGAGAGTANRVKWKGFKVITSVTEAQQYTAGQFIG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 585 Download |
| MAPIKDFISK FSDFKNHKKL ILSSATIALI LFATIVGVAA TKSNQNKNQQ ITTISSTSHA 60 VLKSVCSSTL YPELCYSAVA ASGGKELTSH KDVIEASLNL TTKAVTHNYF AVKKLITKRK 120 GLTAREVTAL HDCLETIDET LDELHEAKED LHMYPTQKSL RKHADDLKTL ISSAITNQGT 180 CLDGFSYDNA DKKVRKALLK GQVHVEHMCS NALAMIKNMT DTDIANFELR DKSSTSNNRK 240 LMEITGDLDG EGWPHWLSVG DRRLLQGSTV KADATVAADG SGDFKTIVAA VAAAPEKSSK 300 RFVIHIKAGV YRENVEVSKK KKNIMFLGDG RGKTIITASR NVVDGSTTFH SATVAAVGEG 360 FLARDITFQN TAGPSKHQAV ALRVGSDFSA FYNCDMLAYQ DTLYVHSNRQ FFVKCHIVGT 420 VDFIFGNAAA VLQDCDINAR KPNSGQKNMV TAQGRSDPNQ NTGIVIQNSR IGGTPDLSAV 480 KGTFPTYLGR PWKQYSRTVI MQSAISDVIR PEGWHEWSGS FALDTLTYRE YLNRGAGAGT 540 ANRVKWKGFK VITSVTEAQQ YTAGQFIGGA GWLASTGFPF LLSL* |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| PLN02314 | PLN02314 | 6.0e-165 | 33 | 584 | 562 | + pectinesterase |
| PLN02484 | PLN02484 | 7.0e-179 | 32 | 584 | 556 | + probable pectinesterase/pectinesterase inhibitor |
| PLN02313 | PLN02313 | 0 | 1 | 584 | 587 | + Pectinesterase/pectinesterase inhibitor |
| pfam01095 | Pectinesterase | 0 | 273 | 569 | 297 | + Pectinesterase. |
| PLN02301 | PLN02301 | 0 | 49 | 580 | 535 | + pectinesterase/pectinesterase inhibitor |
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004857 | enzyme inhibitor activity |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAC50023.1 | 0 | 6 | 584 | 1 | 582 | ATPME2 precursor [Arabidopsis thaliana] |
| GenBank | AAC72288.1 | 0 | 46 | 584 | 43 | 592 | putative pectin methylesterase [Arabidopsis thaliana] |
| RefSeq | NP_175786.1 | 0 | 1 | 584 | 1 | 587 | ATPME2; pectinesterase [Arabidopsis thaliana] |
| RefSeq | NP_188048.1 | 0 | 46 | 584 | 43 | 592 | ATPME3; pectinesterase [Arabidopsis thaliana] |
| RefSeq | XP_002304257.1 | 0 | 58 | 584 | 59 | 579 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 0 | 266 | 584 | 1 | 319 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 0 | 270 | 584 | 1 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 1qjv_B | 7e-25 | 284 | 568 | 18 | 335 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 1qjv_A | 7e-25 | 284 | 568 | 18 | 335 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 2ntq_B | 1e-24 | 284 | 568 | 18 | 335 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
