| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10008739m |
| Family | AA7 |
| Protein Properties | Length: 559 Molecular Weight: 63344.8 Isoelectric Point: 9.5957 |
| Chromosome | Chromosome/Scaffold: 1 Start: 10668655 End: 10670652 |
| Description | FAD-binding Berberine family protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| AA7 | 80 | 539 | 0 |
| NLRFNTSNTPKPFLIIAATHESHVQAAVACGKYHKLQMKIRSGGHDYDGLSYVTRSGKPFFVLDMFNLRSVDVDVASKTAWVQTGATLGEVYYYIWEKSK TLAYPAGVCPTVGVGGHVSGGGYGNLMRKYGLTVDNTLDARMVNVNGKILDRKLMGEDLFWAINGGGGSSYGVVLAYKLNLVDVPETVTVFNVSRTLEQD ATEIVYRWQKVAPELPDEVFIRLFIDVVNGTVSTQKTVRVAFICMFLGDATTLLSILNRRLPELGLVRSDCIETSWVQSVFLWTNMKVGTSERVLLDRNQ TTNYLKRKSDYVREPISRTGLESIWKKMIELEIPTMAFNPYGGAMGRISSTATPFPYRFGNLWKIQYAANWREDRLTDRNIELARELYQFMTPFVSKNPR QSFYNYRDVDLGTNPHNGKIRSYVEGKRYGKKYFAGNFERLVKIKTRVDSGNFFRNEQSI | |||
| Full Sequence |
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| Protein Sequence Length: 559 Download |
| MKCPSITLVQ SLKMRYPSVM LVLFPFFFVF LWESNSPSVS SDTFTQCLTS NSDPKHPISP 60 ALFFPGNGSY SSVLEAYIRN LRFNTSNTPK PFLIIAATHE SHVQAAVACG KYHKLQMKIR 120 SGGHDYDGLS YVTRSGKPFF VLDMFNLRSV DVDVASKTAW VQTGATLGEV YYYIWEKSKT 180 LAYPAGVCPT VGVGGHVSGG GYGNLMRKYG LTVDNTLDAR MVNVNGKILD RKLMGEDLFW 240 AINGGGGSSY GVVLAYKLNL VDVPETVTVF NVSRTLEQDA TEIVYRWQKV APELPDEVFI 300 RLFIDVVNGT VSTQKTVRVA FICMFLGDAT TLLSILNRRL PELGLVRSDC IETSWVQSVF 360 LWTNMKVGTS ERVLLDRNQT TNYLKRKSDY VREPISRTGL ESIWKKMIEL EIPTMAFNPY 420 GGAMGRISST ATPFPYRFGN LWKIQYAANW REDRLTDRNI ELARELYQFM TPFVSKNPRQ 480 SFYNYRDVDL GTNPHNGKIR SYVEGKRYGK KYFAGNFERL VKIKTRVDSG NFFRNEQSIP 540 VLPLSAYLFD YWLEKIFV* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG0277 | GlcD | 5.0e-13 | 72 | 542 | 496 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
| pfam08031 | BBE | 9.0e-14 | 481 | 540 | 60 | + Berberine and berberine like. This domain is found in the berberine bridge and berberine bridge- like enzymes which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyze the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine. | ||
| pfam01565 | FAD_binding_4 | 1.0e-19 | 91 | 230 | 141 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
| GO:0016491 | oxidoreductase activity |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAN80091.1 | 0 | 43 | 543 | 31 | 530 | hypothetical protein [Vitis vinifera] |
| RefSeq | NP_174357.1 | 0 | 21 | 543 | 5 | 527 | FAD-binding domain-containing protein [Arabidopsis thaliana] |
| RefSeq | XP_002269462.1 | 0 | 44 | 543 | 32 | 530 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002523151.1 | 0 | 34 | 543 | 27 | 537 | Reticuline oxidase precursor, putative [Ricinus communis] |
| RefSeq | XP_002523152.1 | 0 | 36 | 543 | 4 | 509 | Reticuline oxidase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 4dns_B | 0 | 44 | 542 | 13 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 4dns_A | 0 | 44 | 542 | 13 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 3tsj_B | 0 | 37 | 542 | 4 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 3tsj_A | 0 | 37 | 542 | 4 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 3tsh_A | 0 | 37 | 542 | 4 | 496 | A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With Glucose Dehydrogenase Activity |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| GT085022 | 296 | 67 | 362 | 0 |
| ES911776 | 270 | 274 | 543 | 0 |
| ES902899 | 268 | 276 | 543 | 0 |
| ES906188 | 277 | 32 | 308 | 0 |
| FY427119 | 250 | 294 | 543 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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