| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10008759m |
| Family | AA7 |
| Protein Properties | Length: 552 Molecular Weight: 61374.1 Isoelectric Point: 10.0038 |
| Chromosome | Chromosome/Scaffold: 1 Start: 8839450 End: 8841215 |
| Description | FAD-binding Berberine family protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| AA7 | 102 | 545 | 0 |
| LAIVAAKHVSHVQATVVCAKSNGIQIRIRSGGHDNEGLSYMSSVPFVILDMHNLRSISVDLSSKQAWVQAGATLGELYVKINEASQTLTFPAGVCPTVGA GGHISGGGFGNLMRKFGVTVDHVIDAQLIDVNGKLLNRSTMGEDLFWAIRGGGSSFGVILSWKINLVEVPKILTVFKVNKTLEQGGTDVLYKWQLVANKL PDSLFITAWPRTVNGAKPGERTIAVVFYAQFLGPKDKLMEIMNQNFSELGLRRDDCHEMSWLNTALFWANFPPGTPKSVLLDRPTNSISFKSKSDFVKKP IPKEGLEKLWKTMFKFNSSVSLQFNPYGGVMDRIAATATAFPHRKGNLFKIQYSTMWLDANATESSLAMMKELFEVAEPYVSSNPREAFFNFRDIDIGSN PSGETNVNKAKIYGYKYFLGNLKRLMQVKAKYDPENFFKNEQSI | |||
| Full Sequence |
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| Protein Sequence Length: 552 Download |
| MKEALVFLLL LTNKFPKKFN IFSKRKCAFY VLCLVLLVSV LEAPVTKPNF VNFIECLGNR 60 TGPENPITDA IFIADNTTTF LSSYVAYTKN TRFSSPNLKR LLAIVAAKHV SHVQATVVCA 120 KSNGIQIRIR SGGHDNEGLS YMSSVPFVIL DMHNLRSISV DLSSKQAWVQ AGATLGELYV 180 KINEASQTLT FPAGVCPTVG AGGHISGGGF GNLMRKFGVT VDHVIDAQLI DVNGKLLNRS 240 TMGEDLFWAI RGGGSSFGVI LSWKINLVEV PKILTVFKVN KTLEQGGTDV LYKWQLVANK 300 LPDSLFITAW PRTVNGAKPG ERTIAVVFYA QFLGPKDKLM EIMNQNFSEL GLRRDDCHEM 360 SWLNTALFWA NFPPGTPKSV LLDRPTNSIS FKSKSDFVKK PIPKEGLEKL WKTMFKFNSS 420 VSLQFNPYGG VMDRIAATAT AFPHRKGNLF KIQYSTMWLD ANATESSLAM MKELFEVAEP 480 YVSSNPREAF FNFRDIDIGS NPSGETNVNK AKIYGYKYFL GNLKRLMQVK AKYDPENFFK 540 NEQSIPPVRV V* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam08031 | BBE | 1.0e-14 | 489 | 546 | 58 | + Berberine and berberine like. This domain is found in the berberine bridge and berberine bridge- like enzymes which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyze the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine. | ||
| COG0277 | GlcD | 5.0e-15 | 102 | 272 | 178 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
| pfam01565 | FAD_binding_4 | 2.0e-21 | 102 | 240 | 140 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
| GO:0016491 | oxidoreductase activity |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAM13232.1 | 0 | 1 | 550 | 1 | 551 | unknown protein [Arabidopsis thaliana] |
| RefSeq | NP_173964.1 | 0 | 26 | 551 | 2 | 527 | FAD-binding domain-containing protein [Arabidopsis thaliana] |
| RefSeq | NP_173965.1 | 0 | 1 | 550 | 1 | 551 | FAD-binding domain-containing protein [Arabidopsis thaliana] |
| RefSeq | NP_173966.1 | 0 | 26 | 551 | 2 | 528 | FAD-binding domain-containing protein [Arabidopsis thaliana] |
| RefSeq | NP_564244.1 | 0 | 26 | 548 | 2 | 525 | FAD-binding domain-containing protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3vte_A | 0 | 52 | 548 | 6 | 513 | A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa |
| PDB | 4dns_B | 0 | 44 | 548 | 4 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 4dns_A | 0 | 44 | 548 | 4 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 3tsj_B | 0 | 52 | 548 | 10 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 3tsj_A | 0 | 52 | 548 | 10 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| FY454239 | 288 | 215 | 501 | 0 |
| EG481331 | 280 | 69 | 347 | 0 |
| EG481242 | 275 | 52 | 325 | 0 |
| ES905941 | 285 | 47 | 330 | 0 |
| HO777438 | 517 | 44 | 546 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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