Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10008765m |
Family | GH28 |
Protein Properties | Length: 550 Molecular Weight: 60322 Isoelectric Point: 8.6858 |
Chromosome | Chromosome/Scaffold: 1 Start: 3607293 End: 3609901 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 161 | 503 | 0 |
ACKIEASTMIVPSEYTFLVGPISFSGPYCQANIVFQLDGTIIAPTDAKTWGKGLMWWIDFTKLKGIKVQGKGVIDGRGSGWWQQDYPFIDGETKLIVPLY NSTHQHPPMPIRSELDGRMPSIKPTALRFYGSFGVEVSGITIQNSPQCHLKFDNCVGVSVHDMVVSSPGDSPNTDGIHLQNTKDVLIHSATLACGDDCIS IQTGCSNVYVHNVNCGPGHGISIGSLGKEGTKACVSNITVRDVAMHNTMTGVRIKTWQGGVGSVKGILFSNIQLNEVQLPIVIDQFYCDHSKCKNQTSAV AVEGVTYERIKGTYTVKPVHFACSDNSPCVDVQLSSIELKPVQ |
Full Sequence |
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Protein Sequence Length: 550 Download |
MIMRRSLSLK SITMMILMAV LVWSVTLETC IARRGRHWRH NHRSSSDLSD SLSTKKPKSH 60 SHSHHSSHNN NHHHKSKPKP KPKQKTPPKA NSPVVSRPPK VQPPPKSNDD NSPVVSRPPK 120 VQSPPLPPLK GSQVFNVMDF GAKGDGKCDD TKAFEAAWAG ACKIEASTMI VPSEYTFLVG 180 PISFSGPYCQ ANIVFQLDGT IIAPTDAKTW GKGLMWWIDF TKLKGIKVQG KGVIDGRGSG 240 WWQQDYPFID GETKLIVPLY NSTHQHPPMP IRSELDGRMP SIKPTALRFY GSFGVEVSGI 300 TIQNSPQCHL KFDNCVGVSV HDMVVSSPGD SPNTDGIHLQ NTKDVLIHSA TLACGDDCIS 360 IQTGCSNVYV HNVNCGPGHG ISIGSLGKEG TKACVSNITV RDVAMHNTMT GVRIKTWQGG 420 VGSVKGILFS NIQLNEVQLP IVIDQFYCDH SKCKNQTSAV AVEGVTYERI KGTYTVKPVH 480 FACSDNSPCV DVQLSSIELK PVQERYHMYD PFCWQTFGEL NTPTLPPIDC LQIGKPPRNK 540 VHESDHDVC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 1.0e-76 | 131 | 500 | 374 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03010 | PLN03010 | 1.0e-80 | 133 | 499 | 373 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 5.0e-81 | 164 | 499 | 337 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 3.0e-90 | 136 | 500 | 369 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 2.0e-103 | 133 | 527 | 400 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF17670.1 | 0 | 1 | 549 | 1 | 542 | AC009398_19 F20B24.8 [Arabidopsis thaliana] |
GenBank | ABK95830.1 | 0 | 1 | 549 | 1 | 516 | unknown [Populus trichocarpa] |
RefSeq | NP_563875.6 | 0 | 1 | 549 | 1 | 532 | polygalacturonase [Arabidopsis thaliana] |
RefSeq | NP_564758.2 | 0 | 1 | 549 | 1 | 539 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | XP_002311773.1 | 0 | 1 | 549 | 1 | 517 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-19 | 165 | 447 | 40 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 3e-19 | 296 | 473 | 112 | 292 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 3e-19 | 296 | 473 | 112 | 292 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 3e-19 | 296 | 473 | 112 | 292 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 3e-19 | 296 | 473 | 112 | 292 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |