| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10008790m |
| Family | AA1 |
| Protein Properties | Length: 542 Molecular Weight: 60309.3 Isoelectric Point: 9.8045 |
| Chromosome | Chromosome/Scaffold: 1 Start: 14068894 End: 14073638 |
| Description | SKU5-similar 6 |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| AA1 | 47 | 496 | 0 |
| QGILINGQFPGPDIHSVTNDNLVINVHNSLDEPFLISWNGVQNRRNSFVDGMSGTTCPIPPRSNYTYILQVKDQIGSFYYFPSLAFHKAAGGFGGIRILS RPGIPVPFADPAGDYTVLIGDWYKSNHTDLKSRLDRGRKLPSPDGILINGRSSGATINVEQGKTYRLRISNVGLQDSLNFRIQNHRMKLVEVEGTHTLQT MFSSLDVHVGQSYSVLITADQSPRDYYVVVSSRFTNKIITTTGVLRYSGSSTPASGQLPGGPTIQVDWSLNQARAIRTNLTASGPRPNPQGSYHYGLIPL IRTIVFGSSAGQINGKQRYGVNSVSFVPADTPLKLADYFKISGVYKVNSISDKPTGGGLYLDTSVLQVDYRTFIEIVFENKEDIVQSYHLNGYSFWVVGM DGGQWRTGSRNGYNLRDAVSRSTVQVYPKSWTAIYIALDNVGMWNLRSEF | |||
| Full Sequence |
|---|
| Protein Sequence Length: 542 Download |
| MAVDRSGTTV LLLCLSFLAV VIAESPYRFF DWNVTYGDIY PLGVRQQGIL INGQFPGPDI 60 HSVTNDNLVI NVHNSLDEPF LISWNGVQNR RNSFVDGMSG TTCPIPPRSN YTYILQVKDQ 120 IGSFYYFPSL AFHKAAGGFG GIRILSRPGI PVPFADPAGD YTVLIGDWYK SNHTDLKSRL 180 DRGRKLPSPD GILINGRSSG ATINVEQGKT YRLRISNVGL QDSLNFRIQN HRMKLVEVEG 240 THTLQTMFSS LDVHVGQSYS VLITADQSPR DYYVVVSSRF TNKIITTTGV LRYSGSSTPA 300 SGQLPGGPTI QVDWSLNQAR AIRTNLTASG PRPNPQGSYH YGLIPLIRTI VFGSSAGQIN 360 GKQRYGVNSV SFVPADTPLK LADYFKISGV YKVNSISDKP TGGGLYLDTS VLQVDYRTFI 420 EIVFENKEDI VQSYHLNGYS FWVVGMDGGQ WRTGSRNGYN LRDAVSRSTV QVYPKSWTAI 480 YIALDNVGMW NLRSEFWARQ YLGQQLYLRV FTTSTSLRDE YPIPRNSRLC GRARGRHTRP 540 L* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02991 | PLN02991 | 0 | 1 | 538 | 539 | + oxidoreductase | ||
| PLN02792 | PLN02792 | 0 | 11 | 538 | 532 | + oxidoreductase | ||
| PLN02354 | PLN02354 | 0 | 9 | 535 | 537 | + copper ion binding / oxidoreductase | ||
| PLN02835 | PLN02835 | 0 | 11 | 538 | 528 | + oxidoreductase | ||
| PLN02168 | PLN02168 | 0 | 10 | 534 | 540 | + copper ion binding / pectinesterase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005507 | copper ion binding |
| GO:0016491 | oxidoreductase activity |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAF99833.1 | 0 | 1 | 541 | 1 | 541 | AC008046_5 Putative pectinesterase [Arabidopsis thaliana] |
| GenBank | AAL09733.1 | 0 | 1 | 541 | 1 | 541 | At1g76160/T23E18_10 [Arabidopsis thaliana] |
| GenBank | AAL24296.1 | 0 | 1 | 541 | 2 | 542 | Unknown protein [Arabidopsis thaliana] |
| RefSeq | NP_177743.1 | 0 | 1 | 541 | 1 | 541 | sks5 (SKU5 Similar 5); copper ion binding / oxidoreductase [Arabidopsis thaliana] |
| RefSeq | NP_564479.1 | 0 | 1 | 541 | 2 | 542 | SKS6 (SKU5-SIMILAR 6); pectinesterase [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1asq_B | 0 | 28 | 531 | 4 | 539 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 1asq_A | 0 | 28 | 531 | 4 | 539 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 1asp_B | 0 | 28 | 531 | 4 | 539 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 1asp_A | 0 | 28 | 531 | 4 | 539 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 1aso_B | 0 | 28 | 531 | 4 | 539 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
