Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10008847m |
Family | GH28 |
Protein Properties | Length: 524 Molecular Weight: 57222.3 Isoelectric Point: 6.806 |
Chromosome | Chromosome/Scaffold: 1 Start: 527223 End: 529907 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 149 | 477 | 0 |
NNENSTDSVLLVPYGYTFMIQSTIFTGPCRSYQFFQVDGTIVTPDGPDSWPSNVSKRQWLVFYRVNGLALKGAGVIDGRGQKWWDLPCKPHRAVNKSAIV AGPCDSPIALRFFMSSNLRVEGLHIKNSPQFHFRFDGCQGVHVESLHITAPPLSPNTDGIHIENSNSVTIYNSIISNGDDCVSIGSGSYDVDIRNLTCGP GGHGISIGSLGNHNSHACVSNITVSDSIIKYSDNGVRIKTWQGGSGSVSGVTFNNIHVDSVRNPIIIDQYYCMTKDCANKTSAVFVSDIAYQGIKGTYDI RSPPMHFGCSDAVPCTNLTLSDIELLPAK |
Full Sequence |
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Protein Sequence Length: 524 Download |
RLLFLHTFFL YLQTLSPQNH HPHFQKNTLK KMLSSTYNRN QILCFVVILI LTLISLTESR 60 YHHHKDKHKR NNHNHHSSKP QPPSSSISQP PTPPPGPPDA PSPSPPPSPS DEPEEDNNGV 120 YNVRKFGAVG DGETDDTQAF KTAWDSACNN ENSTDSVLLV PYGYTFMIQS TIFTGPCRSY 180 QFFQVDGTIV TPDGPDSWPS NVSKRQWLVF YRVNGLALKG AGVIDGRGQK WWDLPCKPHR 240 AVNKSAIVAG PCDSPIALRF FMSSNLRVEG LHIKNSPQFH FRFDGCQGVH VESLHITAPP 300 LSPNTDGIHI ENSNSVTIYN SIISNGDDCV SIGSGSYDVD IRNLTCGPGG HGISIGSLGN 360 HNSHACVSNI TVSDSIIKYS DNGVRIKTWQ GGSGSVSGVT FNNIHVDSVR NPIIIDQYYC 420 MTKDCANKTS AVFVSDIAYQ GIKGTYDIRS PPMHFGCSDA VPCTNLTLSD IELLPAKGDI 480 VLDPFCWNAY GIAEELSIPP VWCLMSDPPT ALQGALVDKC GSS* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 1.0e-81 | 117 | 479 | 365 | + polygalacturonase | ||
PLN03003 | PLN03003 | 6.0e-82 | 122 | 508 | 395 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 4.0e-91 | 156 | 473 | 318 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 1.0e-97 | 122 | 473 | 355 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 1.0e-121 | 120 | 507 | 390 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAD22651.1 | 0 | 38 | 522 | 5 | 451 | AC007138_15 putative polygalacturonidase [Arabidopsis thaliana] |
EMBL | CBI37004.1 | 0 | 120 | 520 | 88 | 484 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_192098.2 | 0 | 38 | 522 | 5 | 467 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_563654.1 | 0 | 32 | 523 | 1 | 491 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002320271.1 | 0 | 116 | 520 | 38 | 438 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 2e-25 | 185 | 477 | 40 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 2e-25 | 185 | 477 | 40 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 2e-25 | 185 | 477 | 40 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 2e-25 | 185 | 477 | 40 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 2e-25 | 185 | 477 | 40 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EV124391 | 256 | 232 | 487 | 0 |
DW479564 | 329 | 125 | 453 | 0 |
DV135481 | 292 | 130 | 421 | 0 |
EX099612 | 210 | 313 | 522 | 0 |
DR450143 | 295 | 168 | 462 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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