Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10008991m |
Family | GH28 |
Protein Properties | Length: 485 Molecular Weight: 52176.5 Isoelectric Point: 4.448 |
Chromosome | Chromosome/Scaffold: 1 Start: 16413656 End: 16416760 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 114 | 440 | 0 |
AACAVESGVVLAPEGGVFKITSTIFSGPCQPGLVFQLDGVLMPPDGPEEWPEKDSKNQWLVFYRLDSITFAGKGTVEGNGQKWWDLPCKPHRGPNGSSSS GPCESPTMIRFFMSNNIEVKGLRIQNSPQFHMKFDGCQGVLINEIQISSPKLSPNTDGIHLGNTRSVGIYNSVVSNGDDCISIGTGCSDVDIQGVTCGPS HGISIGSLGVHNSQACVSNITVRNTAIRDSDNGLRVKTWQGGTGSVSNLLFENIQMENVLNCIIVDQYYCQSKECRNETSAVRVFDVEYRNIKGTYDVRS PPIHFACSDTVACTNITMSEVELLPEE |
Full Sequence |
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Protein Sequence Length: 485 Download |
MASLGGILVI YIISTVLFGH FTYVVQGRYH YHKSRRGLTH PLPPPPSPSP PPPPPPLESA 60 NPPDIVPSDP YPNPNPNPAP GDSDTGCIFD VTSYGAVGDG SCDDTAAFRD AWKAACAVES 120 GVVLAPEGGV FKITSTIFSG PCQPGLVFQL DGVLMPPDGP EEWPEKDSKN QWLVFYRLDS 180 ITFAGKGTVE GNGQKWWDLP CKPHRGPNGS SSSGPCESPT MIRFFMSNNI EVKGLRIQNS 240 PQFHMKFDGC QGVLINEIQI SSPKLSPNTD GIHLGNTRSV GIYNSVVSNG DDCISIGTGC 300 SDVDIQGVTC GPSHGISIGS LGVHNSQACV SNITVRNTAI RDSDNGLRVK TWQGGTGSVS 360 NLLFENIQME NVLNCIIVDQ YYCQSKECRN ETSAVRVFDV EYRNIKGTYD VRSPPIHFAC 420 SDTVACTNIT MSEVELLPEE GELVDDPFCW NAYGTQETLT IPPIDCLLDG SPVVEEAYDS 480 SYGC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 3.0e-71 | 89 | 467 | 386 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 1.0e-72 | 88 | 431 | 348 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 2.0e-85 | 122 | 432 | 313 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 4.0e-91 | 91 | 431 | 345 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 6.0e-104 | 88 | 480 | 396 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF79535.1 | 0 | 1 | 484 | 1 | 492 | AC023673_23 F21D18.18 [Arabidopsis thaliana] |
GenBank | AAK95305.1 | 0 | 1 | 484 | 1 | 475 | AF410319_1 At1g48100/F21D18_17 [Arabidopsis thaliana] |
RefSeq | NP_175244.1 | 0 | 1 | 484 | 1 | 475 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002263668.1 | 0 | 80 | 484 | 73 | 477 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002519290.1 | 0 | 1 | 484 | 1 | 479 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 7e-26 | 151 | 436 | 41 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 7e-26 | 151 | 436 | 41 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 7e-26 | 151 | 436 | 41 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 7e-26 | 151 | 436 | 41 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 7e-26 | 151 | 436 | 41 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |