| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10009197m |
| Family | PL1 |
| Protein Properties | Length: 432 Molecular Weight: 47727.7 Isoelectric Point: 8.1081 |
| Chromosome | Chromosome/Scaffold: 1 Start: 1376364 End: 1380604 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 142 | 348 | 0 |
| VIQDRPLWIVFQRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQYVTNVIVHGLHIHDCKPTGNAMVRSSETHFGWRTMADGDAISIFGSSHVWI DHNSLSHCADGLVDAVMGSTAITISNNHLTHHNEVMLLGHSDSYMRDKAMQVTIAYNHFGVGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINS QGNRYAA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 432 Download |
| MAVLPTWVLA MLCLLFVVGA MDNTTHDKIS SLPRSDDSEW NQHAVTNPDE VADEVLAMTE 60 MSARNHTERR KLGYFTCGTG NPIDDCWRCD RNWHKNRKRL ADCGIGFGRN AIGGRDGRFY 120 VVTDPRDDNP VNPRPGTLRH AVIQDRPLWI VFQRDMVIQL KQELIVNSFK TIDGRGANVH 180 IANGGCITIQ YVTNVIVHGL HIHDCKPTGN AMVRSSETHF GWRTMADGDA ISIFGSSHVW 240 IDHNSLSHCA DGLVDAVMGS TAITISNNHL THHNEVMLLG HSDSYMRDKA MQVTIAYNHF 300 GVGLIQRMPR CRHGYFHVVN NDYTHWEMYA IGGSANPTIN SQGNRYAAPK NPFAKEVTKR 360 VDTPASHWKG WNWRSEGDLL QNGAYFTSSG AAASGSYARA SSLSAKSSSL VGHITSDAGA 420 LPCRRGRQCS S* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 7.0e-27 | 161 | 344 | 196 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 1.0e-70 | 161 | 346 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 4.0e-80 | 155 | 350 | 207 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ADD62392.1 | 0 | 21 | 429 | 41 | 445 | pectase lyase [Prunus persica] |
| DDBJ | BAF43573.1 | 0 | 21 | 429 | 21 | 425 | pectate lyase [Prunus persica] |
| RefSeq | NP_563715.1 | 0 | 22 | 431 | 22 | 431 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | NP_567409.1 | 0 | 37 | 429 | 77 | 470 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002297822.1 | 0 | 1 | 429 | 1 | 450 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 81 | 421 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 81 | 421 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 1e-16 | 150 | 346 | 50 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 8e-16 | 153 | 347 | 122 | 331 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 1pcl_A | 0.000000000006 | 159 | 346 | 71 | 276 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
