Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10009486m |
Family | CBM43 |
Protein Properties | Length: 373 Molecular Weight: 38637.7 Isoelectric Point: 9.2522 |
Chromosome | Chromosome/Scaffold: 1 Start: 3131943 End: 3134465 |
Description | Carbohydrate-binding X8 domain superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 180 | 259 | 9.6e-35 |
WCVAKPGASQTSLQQALDYACGIADCSQIQQGGNCYSPISLQSHASFAFNSYYQKNPSPQSCDFGGAASLVSSNPSTGSC |
Full Sequence |
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Protein Sequence Length: 373 Download |
SLACKVQSAS SFLFSPNFLK RISKLSLIPS SLHNYVLINN TRKKKKTLSQ AQALMAIQSY 60 FFFTFFFLSL LSLCSSRITN HDVLNPPTVF PTNPTTTPPT TFPPVTITPT NPATAVPITP 120 PVTTIPPPVT TIPPPTLTPP VTNPVTQYPP TQPSGMVPVP VPVVAPPVVS NSPSASGQSW 180 CVAKPGASQT SLQQALDYAC GIADCSQIQQ GGNCYSPISL QSHASFAFNS YYQKNPSPQS 240 CDFGGAASLV SSNPSTGSCI YQTGSSASTP TTAGTTTPTP STQTVNQPPV TSTPIIPSGG 300 GIIGVGTPPG IFNPANPTSN TLNNPSSGGS GVYGFDGSPN GNNPTSSDSR RLKTHVGHAM 360 VATLILHAVL FH* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 9.0e-22 | 179 | 248 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 5.0e-36 | 179 | 261 | 85 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAC33206.1 | 0 | 55 | 255 | 1 | 212 | Unknown protein [Arabidopsis thaliana] |
RefSeq | NP_172417.2 | 0 | 55 | 372 | 1 | 330 | glucan endo-1,3-beta-glucosidase-related [Arabidopsis thaliana] |
RefSeq | XP_002276666.1 | 0 | 86 | 328 | 344 | 577 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002319461.1 | 0 | 73 | 363 | 293 | 604 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002512573.1 | 0 | 85 | 366 | 129 | 398 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2jon_A | 3e-16 | 172 | 266 | 6 | 101 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |