| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10009664m |
| Family | CE11 |
| Protein Properties | Length: 339 Molecular Weight: 37027.5 Isoelectric Point: 7.8041 |
| Chromosome | Chromosome/Scaffold: 1 Start: 9152456 End: 9154133 |
| Description | UDP-3-O-acyl N-acetylglycosamine deacetylase family protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
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| Family | Start | End | Evalue |
| CE11 | 51 | 335 | 0 |
| QQTLAGSVEVKGKALHSGKVSKVKLIPEITGAGRYFEFRSKFIPASIEFAQESPLCTTLLKDELKIRTIEHLLSALEAKGVDNCRIQIESERSDDREVEV PIFDGSAKEWVEAIEGVGIKVAQNHVGESMEKMVAHVNKPVYVCKYDSFVAAFPALETRITCGIDFPQVPAIGCQWFSWRPVHESSFAKDIAPSRTFCVY EEVERMREAGLIKGGSLDNAIVCSAKHGWMNPPLRFDNEACRHKILDIIGDLSLVAQGGNGGLPVAHIVAYKAGHTLHTDLARHL | |||
| Full Sequence |
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| Protein Sequence Length: 339 Download |
| VNINPTSKSM RLSVTVKANK PSFLISWIRF SSTASSSSSP AVSLNPSGRL QQTLAGSVEV 60 KGKALHSGKV SKVKLIPEIT GAGRYFEFRS KFIPASIEFA QESPLCTTLL KDELKIRTIE 120 HLLSALEAKG VDNCRIQIES ERSDDREVEV PIFDGSAKEW VEAIEGVGIK VAQNHVGESM 180 EKMVAHVNKP VYVCKYDSFV AAFPALETRI TCGIDFPQVP AIGCQWFSWR PVHESSFAKD 240 IAPSRTFCVY EEVERMREAG LIKGGSLDNA IVCSAKHGWM NPPLRFDNEA CRHKILDIIG 300 DLSLVAQGGN GGLPVAHIVA YKAGHTLHTD LARHLTID* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK13188 | PRK13188 | 2.0e-66 | 51 | 335 | 318 | + bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; Reviewed | ||
| TIGR00325 | lpxC | 3.0e-73 | 51 | 333 | 289 | + UDP-3-0-acyl N-acetylglucosamine deacetylase. UDP-3-O-(R-3-hydroxymyristoyl)-GlcNAc deacetylase from E. coli , LpxC, was previously designated EnvA. This enzyme is involved in lipid-A precursor biosynthesis. It is essential for cell viability [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. | ||
| pfam03331 | LpxC | 5.0e-85 | 51 | 333 | 289 | + UDP-3-O-acyl N-acetylglycosamine deacetylase. The enzymes in this family catalyze the second step in the biosynthetic pathway for lipid A. | ||
| COG0774 | LpxC | 3.0e-88 | 49 | 335 | 295 | + UDP-3-O-acyl-N-acetylglucosamine deacetylase [Cell envelope biogenesis, outer membrane] | ||
| PRK13186 | lpxC | 2.0e-104 | 51 | 335 | 290 | + UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; Reviewed | ||
| Gene Ontology | |
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| GO Term | Description |
| GO:0008759 | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity |
| GO:0009245 | lipid A biosynthetic process |
| Annotations - NR Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAG03128.1 | 0 | 8 | 322 | 237 | 542 | AC004133_22 F5A9.8 [Arabidopsis thaliana] |
| GenBank | AAG03130.1 | 0 | 8 | 322 | 237 | 548 | AC004133_24 F5A9.4 [Arabidopsis thaliana] |
| DDBJ | BAD94001.1 | 0 | 10 | 338 | 1 | 326 | hypothetical protein [Arabidopsis thaliana] |
| RefSeq | NP_173874.2 | 0 | 10 | 338 | 1 | 326 | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [Arabidopsis thaliana] |
| RefSeq | NP_173884.5 | 0 | 8 | 338 | 42 | 369 | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3uhm_A | 7e-35 | 51 | 338 | 4 | 277 | A Chain A, Crystal Structure Of A 6-Sst6-Sft From Pachysandra Terminalis |
| PDB | 3u1y_B | 7e-35 | 51 | 338 | 4 | 277 | A Chain A, Crystal Structure Of A 6-Sst6-Sft From Pachysandra Terminalis |
| PDB | 3u1y_A | 7e-35 | 51 | 338 | 4 | 277 | A Chain A, Crystal Structure Of A 6-Sst6-Sft From Pachysandra Terminalis |
| PDB | 3p3e_A | 7e-35 | 51 | 338 | 4 | 277 | A Chain A, Crystal Structure Of A 6-Sst6-Sft From Pachysandra Terminalis |
| PDB | 2ves_C | 7e-35 | 51 | 338 | 4 | 277 | A Chain A, Crystal Structure Of Lpxc From Pseudomonas Aeruginosa Complexed With The Potent Bb-78485 Inhibitor |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| BX837978 | 156 | 157 | 312 | 0 |
| BX837978 | 135 | 16 | 150 | 0 |
| FY448967 | 243 | 12 | 252 | 0 |
| CK277774 | 293 | 18 | 310 | 0 |
| CK277774 | 25 | 312 | 336 | 0.66 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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