Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10011085m |
Family | CE8 |
Protein Properties | Length: 343 Molecular Weight: 37777.6 Isoelectric Point: 8.2677 |
Chromosome | Chromosome/Scaffold: 1 Start: 1629253 End: 1631261 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 145 | 331 | 0 |
GAQAVAIRIAGDESAFVGCGFFGAQDTLHDDRGRHYFKDCYIQGSIDFIFGNAKSLYQDCRIISMANQVSPGSKAVNGAVTANGRNSKDENSGFSFVNCS IGGTGHVWLGRAWRPYSRVVFVSTTMTDVIASEGWNNFNDPSRDATIFYGEYNCTGAGADMSKRAPYVQKLNETQVALFVNASYIDG |
Full Sequence |
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Protein Sequence Length: 343 Download |
ISLIPKIMKY RRISLALSIG IAIIAILASK TLLEKHHEAF MSSPFDFLHG IKAISYSVKI 60 SFCGHHHRHH HHRHRHSSDT KKKVSICDDF PKNIPPLDTD TTSYLCVDKN GCCNFTTVQS 120 AVDAVGNYSQ RRNNVAPIPK PGDVGAQAVA IRIAGDESAF VGCGFFGAQD TLHDDRGRHY 180 FKDCYIQGSI DFIFGNAKSL YQDCRIISMA NQVSPGSKAV NGAVTANGRN SKDENSGFSF 240 VNCSIGGTGH VWLGRAWRPY SRVVFVSTTM TDVIASEGWN NFNDPSRDAT IFYGEYNCTG 300 AGADMSKRAP YVQKLNETQV ALFVNASYID GDQWLLQFSD LY* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02304 | PLN02304 | 1.0e-33 | 30 | 133 | 107 | + probable pectinesterase | ||
PLN02432 | PLN02432 | 4.0e-67 | 145 | 335 | 191 | + putative pectinesterase | ||
PLN02665 | PLN02665 | 3.0e-81 | 91 | 336 | 252 | + pectinesterase family protein | ||
PLN02682 | PLN02682 | 4.0e-86 | 134 | 336 | 203 | + pectinesterase family protein | ||
PLN02304 | PLN02304 | 5.0e-153 | 134 | 341 | 208 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAB71446.1 | 0 | 25 | 341 | 16 | 391 | Similar to Prunus pectinesterase (gb |
RefSeq | NP_172023.1 | 0 | 134 | 341 | 187 | 393 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002267842.1 | 0 | 134 | 339 | 192 | 397 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002323171.1 | 0 | 134 | 338 | 174 | 378 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002521065.1 | 0 | 134 | 339 | 190 | 395 | Pectinesterase-1 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 1e-32 | 74 | 335 | 46 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 3e-26 | 147 | 335 | 109 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 0.0000000000008 | 147 | 329 | 129 | 334 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 0.0000000000008 | 147 | 329 | 129 | 334 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 0.0000000000008 | 147 | 329 | 129 | 334 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |