| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10011175m |
| Family | CBM53 |
| Protein Properties | Length: 1094 Molecular Weight: 124096 Isoelectric Point: 7.0146 |
| Chromosome | Chromosome/Scaffold: 1 Start: 4051300 End: 4056534 |
| Description | starch synthase 3 |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM53 | 206 | 289 | 7e-30 |
| EDIEVFLNRNLSTLKNEPDVLIMGAFNSWKWKSFTRRLEKTWILGDWWSCLLHIPKEAYKIDFVFFNGQSVYDNNDSKDFCVEI | |||
| CBM53 | 381 | 474 | 3.6e-31 |
| DNVKLYYNKSSGPLANSKELWVHGGFNNWVDGLSIVEKLVDAELKADPKRGDWWFAEVVVPGGALVIDWVFADGPPKEAFLYDNNSHQDFHALV | |||
| CBM53 | 547 | 635 | 4.8e-32 |
| NAVTVFYNPSYTVLNGKPEIWFRGSFNRWTHRLGPLPPQKMEAADDESSHVKTTAKVPLDAYMMDFVFSEKEDGGIFDNKNGLDYHLPV | |||
| GT5 | 646 | 1089 | 0 |
| HIVHIAVEMAPIAKVGGLGDVVTSLSRAVQELNHNVDIIFPKYDCLKHNFVKDLQFNRSYHWGGTEIKVWHGKVEGLSVYFLDPQNGLFQRGCVYGCKDD AERFGFFCHAALEFLLQGGFHPDILHCHDWSSAPVSWLFKDHYTHYGLIKTRVVFTIHNLEFGANAIGKAMTSADKATTVSPTYAKEVAGNSVISPHLYK FHGIINGIDPEIWDPYNDSFLPVPYTSENVVEGKKAAKEELQNRLGLKNADLPVVGIITRLTHQKGIHLIKHAIWRTLERNGQVVLLGSAPDPRIQNDFV NLANQLHSSHGDRARLVLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLIAMRYGAVPVVRKTGGLFDTVFDVDHDKERAQAQVLEPNGFSFDGADAPGV DYALNRAISAWYDGREWFNSLCKTVMEQDWSWNRPALEYLELYH | |||
| Full Sequence |
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| Protein Sequence Length: 1094 Download |
| MEVCWQIQRP ARLGKVLQEK GRLKISTCSI GFLPRSISSL ASLESQYNSN GFLHQITASA 60 DFSRKKQGRM AASGPKSSGP RGFGRRTTVG SAQKRTQKKN GEKDSNATST VTNEVSGVSK 120 LPETKADVQK QGSVVFGERN VSDSSDAKDG SDRLDKKTTE DDDLLKQKLK IERENLRRKE 180 IEALAKENLA RGNRMFVYPV IVKPDEDIEV FLNRNLSTLK NEPDVLIMGA FNSWKWKSFT 240 RRLEKTWILG DWWSCLLHIP KEAYKIDFVF FNGQSVYDNN DSKDFCVEIK GGMDKVDFEN 300 FLLEEKLREQ EKLAKEEAER EKQKEEKRRI EARKAAIEAD RAQAKVETQK RRELLQPAIK 360 KAVVSAENVW YIEPSNFKAE DNVKLYYNKS SGPLANSKEL WVHGGFNNWV DGLSIVEKLV 420 DAELKADPKR GDWWFAEVVV PGGALVIDWV FADGPPKEAF LYDNNSHQDF HALVPQRIPE 480 EIYWLEEESL MFRKLQEERQ LKEEAMREKM EKTARLKAET KERTLKKFLL SQKDVVYTEP 540 LEIQAGNAVT VFYNPSYTVL NGKPEIWFRG SFNRWTHRLG PLPPQKMEAA DDESSHVKTT 600 AKVPLDAYMM DFVFSEKEDG GIFDNKNGLD YHLPVMGGIS KEPPLHIVHI AVEMAPIAKV 660 GGLGDVVTSL SRAVQELNHN VDIIFPKYDC LKHNFVKDLQ FNRSYHWGGT EIKVWHGKVE 720 GLSVYFLDPQ NGLFQRGCVY GCKDDAERFG FFCHAALEFL LQGGFHPDIL HCHDWSSAPV 780 SWLFKDHYTH YGLIKTRVVF TIHNLEFGAN AIGKAMTSAD KATTVSPTYA KEVAGNSVIS 840 PHLYKFHGII NGIDPEIWDP YNDSFLPVPY TSENVVEGKK AAKEELQNRL GLKNADLPVV 900 GIITRLTHQK GIHLIKHAIW RTLERNGQVV LLGSAPDPRI QNDFVNLANQ LHSSHGDRAR 960 LVLTYDEPLS HLIYAGADFI LVPSIFEPCG LTQLIAMRYG AVPVVRKTGG LFDTVFDVDH 1020 DKERAQAQVL EPNGFSFDGA DAPGVDYALN RAISAWYDGR EWFNSLCKTV MEQDWSWNRP 1080 ALEYLELYHS ARK* 1140 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02939 | PLN02939 | 4.0e-145 | 645 | 1091 | 493 | + transferase, transferring glycosyl groups | ||
| TIGR02095 | glgA | 3.0e-162 | 645 | 1091 | 490 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
| PRK00654 | glgA | 5.0e-174 | 645 | 1093 | 488 | + glycogen synthase; Provisional | ||
| PLN02316 | PLN02316 | 0 | 70 | 1093 | 1041 | + synthase/transferase | ||
| cd03791 | GT1_Glycogen_synthase_DULL1_like | 0 | 646 | 1090 | 490 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0009058 | biosynthetic process |
| GO:2001070 | starch binding |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABB46391.1 | 0 | 70 | 1093 | 1 | 1025 | soluble starch synthase III [Arabidopsis thaliana] |
| EMBL | CAA64173.1 | 0 | 103 | 1093 | 217 | 1228 | soluble-starch-synthase [Solanum tuberosum] |
| RefSeq | NP_172637.1 | 0 | 70 | 1093 | 1 | 1025 | ATSS3 (starch synthase 3); starch synthase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] |
| RefSeq | XP_002305571.1 | 0 | 70 | 1093 | 1 | 1017 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002518476.1 | 0 | 70 | 1093 | 1 | 1058 | starch synthase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3d1j_A | 0 | 645 | 1089 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 3guh_A | 0 | 645 | 1089 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4u_A | 0 | 645 | 1089 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4t_A | 0 | 645 | 1089 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2qzs_A | 0 | 645 | 1089 | 1 | 474 | A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With Adp And Glucose(Wtgsb) |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO778003 | 707 | 174 | 880 | 0 |
| HO794758 | 572 | 523 | 1093 | 0 |
| HO778003 | 143 | 500 | 641 | 0.0001 |
| HO794758 | 129 | 171 | 295 | 0.029 |
| HO794758 | 124 | 360 | 481 | 0.31 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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