| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10011187m |
| Family | PL1 |
| Protein Properties | Length: 386 Molecular Weight: 42836.7 Isoelectric Point: 9.529 |
| Chromosome | Chromosome/Scaffold: 1 Start: 4121742 End: 4123163 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 97 | 304 | 0 |
| AVIQAKPLWITFARDMVIVLQNELIMNSYKTIDGRGAKVEIAYGPCITIQHVSHVIIHGISIHDCKPGKSGRVRSSPTHIGNRKGSDGDAIAIFDSSHIW IDHCHFSRCQDGLIDVLHASTAVTISNNYFTQHDKVMLLGHNDNNVEDKIMRVTIAFNHFGPGLIERMPRVRRGYAHVANNRYEKWQMYAIGGSADPTIF SEGNYFVA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 386 Download |
| MASLFLTVSL LLAAFSSSLV EAAYSNGYTY TIPKLSLNPI DSCWRRNPGW AYNRRALADC 60 AVGFGKAAVG GKYGSVYVVT NPTDDPENPR PGTLRHAVIQ AKPLWITFAR DMVIVLQNEL 120 IMNSYKTIDG RGAKVEIAYG PCITIQHVSH VIIHGISIHD CKPGKSGRVR SSPTHIGNRK 180 GSDGDAIAIF DSSHIWIDHC HFSRCQDGLI DVLHASTAVT ISNNYFTQHD KVMLLGHNDN 240 NVEDKIMRVT IAFNHFGPGL IERMPRVRRG YAHVANNRYE KWQMYAIGGS ADPTIFSEGN 300 YFVAPDDSSK KQVTKRIDSG YDWRRWKWRT SKDVFKNGAY FVPSGYGTVT PLYKRAEWFP 360 VSHGSLVPSL TSSAGPLRCY SGRIC* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 4.0e-27 | 185 | 320 | 154 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 7.0e-58 | 117 | 302 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 6.0e-74 | 111 | 306 | 207 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_172656.1 | 0 | 1 | 385 | 1 | 384 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | NP_193940.1 | 0 | 6 | 385 | 4 | 393 | pectate lyase family protein [Arabidopsis thaliana] |
| Swiss-Prot | O65388 | 0 | 1 | 385 | 1 | 390 | PEL2_ARATH RecName: Full=Putative pectate lyase 2; Flags: Precursor |
| RefSeq | XP_002263615.1 | 0 | 3 | 385 | 5 | 397 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002518442.1 | 0 | 34 | 385 | 40 | 390 | Pectate lyase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 38 | 375 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 38 | 375 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 1e-17 | 180 | 304 | 112 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 8e-17 | 110 | 302 | 125 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 1jta_A | 0.00000000000002 | 185 | 318 | 144 | 305 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
