Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10011268m |
Family | GH28 |
Protein Properties | Length: 1078 Molecular Weight: 118456 Isoelectric Point: 5.1647 |
Chromosome | Chromosome/Scaffold: 1 Start: 8300902 End: 8305661 |
Description | Tetratricopeptide repeat (TPR)-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 711 | 1041 | 0 |
SKACDTPKSVFLVPEGRRYLVNATKFNGPCQQKLIIQIDGTIVAPDEPSNWDSKFQRIWLEFSKLKGVVFQGKGVIDGSGSKWWAASCKKNKSNPCKSAP TALTIESSSGVKVSGLTIQNSQQMNFIIARSNSVRVSKVMVSSPGDSPNTDGIHITGSTNVILQDCKIGTGDDCVSIVNASSNIKMKNIYCGPGHGISIG SLGKDNTTGIVTQVVLDTALLRGTTNGLRIKTYQGGSGYVQGIRFSNVEMQDVANPILIDQFYCDSPTTCQNQTSAVKISQIMYKNVTGTTKSAKAIKFA CSDTVPCSHIVLNNVNLEGKDGQVEAYCNSA |
Full Sequence |
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Protein Sequence Length: 1078 Download |
MPRLEFSSFL QENPSGIVYT HNRKIDELIK SGNLITAQEV FDGMSVRDVV TYNLLISGYS 60 RNGCSLRAFE LYAKMVTCGL RESASTFPSV LSVCSDGLFC REGIQVHCRV VSLGFECNLF 120 VRSALVGLYA CLQLVDVTLK LFDEMPERNL PVCNLLLRCF CEAGDSKRLF GVFHRMELEG 180 VTENGLTYCY MIRGCSNDQL YYEGKQLHSQ VIKSGWDMSN IFVANALVDF YSACGDLFDS 240 MRAFNAVPEK DVISWNSIVS VCADYGSVLD SVDLFSKMQF WGKRPSIRSF MSFLNFCSRN 300 SDIQSGKQIH CYVLKMGFDV SSLHVQSALI DMYGKCNDID SSLLVYQSLP GLSLECCNSL 360 MTSLMHCGIT KDIIEMFGSM ISEGTGIDEV TLSTVLKAFS LSVPANLHSC ALIHCWSMKS 420 GYASDVAVSC SLIDAYSKSG QNEVSRKVFI ELESPNIFCW TSIINGYARN GMGRECLEML 480 REMDQKNLMP DEVTILSVLS GCSHSGLVEE GELIFDSMES RYGISPGRKL YACMVDLLGR 540 AGLVEKAERL LLQAHGDADC IAWSSLLQSC RIHKNKSIGR RAAEVLMDLE PEDFTVYIQV 600 SKFYFEIGDF EFSRQIREIA ASRELMREIG YSLLLASAYG AAGKMVYTDL DILEELENFD 660 VMLDDDDDTK LFDLPSFTSR NSGKNLVNVD TFGAAGDGVS DDTQAFVSAW SKACDTPKSV 720 FLVPEGRRYL VNATKFNGPC QQKLIIQIDG TIVAPDEPSN WDSKFQRIWL EFSKLKGVVF 780 QGKGVIDGSG SKWWAASCKK NKSNPCKSAP TALTIESSSG VKVSGLTIQN SQQMNFIIAR 840 SNSVRVSKVM VSSPGDSPNT DGIHITGSTN VILQDCKIGT GDDCVSIVNA SSNIKMKNIY 900 CGPGHGISIG SLGKDNTTGI VTQVVLDTAL LRGTTNGLRI KTYQGGSGYV QGIRFSNVEM 960 QDVANPILID QFYCDSPTTC QNQTSAVKIS QIMYKNVTGT TKSAKAIKFA CSDTVPCSHI 1020 VLNNVNLEGK DGQVEAYCNS AEGFGYGVIH PSADCLYSHD DKGMYQSYKS ETGHDEL* 1080 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03077 | PLN03077 | 6.0e-84 | 28 | 628 | 604 | + Protein ECB2; Provisional | ||
PLN03003 | PLN03003 | 2.0e-88 | 677 | 1056 | 388 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 1.0e-91 | 718 | 1041 | 324 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 3.0e-104 | 687 | 1051 | 368 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 6.0e-120 | 676 | 1071 | 400 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF79584.1 | 0 | 2 | 1077 | 30 | 1161 | AC007945_4 F28C11.9 [Arabidopsis thaliana] |
EMBL | CAN65318.1 | 0 | 4 | 1071 | 31 | 1037 | hypothetical protein [Vitis vinifera] |
EMBL | CBI28554.1 | 0 | 4 | 1071 | 31 | 1096 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_173759.2 | 0 | 2 | 632 | 30 | 660 | unknown protein [Arabidopsis thaliana] |
RefSeq | NP_173760.2 | 0 | 637 | 1077 | 17 | 460 | polygalacturonase [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 4e-23 | 782 | 1002 | 115 | 338 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1hg8_A | 4e-19 | 721 | 1004 | 26 | 308 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
PDB | 2iq7_G | 4e-19 | 786 | 1029 | 80 | 321 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 4e-19 | 786 | 1029 | 80 | 321 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 4e-19 | 786 | 1029 | 80 | 321 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EV550328 | 224 | 723 | 946 | 0 |
ES907693 | 238 | 644 | 879 | 0 |
EV524933 | 216 | 872 | 1078 | 0 |
FE686036 | 282 | 645 | 925 | 0 |
EH685542 | 251 | 830 | 1078 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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