Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10011292m |
Family | GH28 |
Protein Properties | Length: 395 Molecular Weight: 41572.6 Isoelectric Point: 9.872 |
Chromosome | Chromosome/Scaffold: 1 Start: 1769402 End: 1771370 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 52 | 379 | 0 |
QGACGSVASATVVVPTGTFLLKPITFGGPCKSKLKFQVTGTVVAPTDYRSFGSSGYWILFNKVNRFSLVGGTFDARGDGFWSCRKSGQSCPPGVRSISFN SAKDVVISGVKSMNSQVSHMTLNGCTNVAVRNIRLVAPGNSPNTDGFTVQFSTGITLTGSTVQTGDDCVAIGPGTRNFLISKLACGPGHGVSIGSLAKQL NEDGVENVTLSSSVFTGTQNGVRIKSWARPSTGFVRNVFFQNLIMKNVQNPIIIDQNYCPSNLGCPTEHSGVKISQVTYKNIQGTSATQQAMKLACSKSN PCTGITLQDIKLTYNKGTPATSYCFNAV |
Full Sequence |
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Protein Sequence Length: 395 Download |
MAKSAITLPL LFILLTFIDV SSSASMVFNV VTFGAKPDGV TDSTAAFLKA WQGACGSVAS 60 ATVVVPTGTF LLKPITFGGP CKSKLKFQVT GTVVAPTDYR SFGSSGYWIL FNKVNRFSLV 120 GGTFDARGDG FWSCRKSGQS CPPGVRSISF NSAKDVVISG VKSMNSQVSH MTLNGCTNVA 180 VRNIRLVAPG NSPNTDGFTV QFSTGITLTG STVQTGDDCV AIGPGTRNFL ISKLACGPGH 240 GVSIGSLAKQ LNEDGVENVT LSSSVFTGTQ NGVRIKSWAR PSTGFVRNVF FQNLIMKNVQ 300 NPIIIDQNYC PSNLGCPTEH SGVKISQVTY KNIQGTSATQ QAMKLACSKS NPCTGITLQD 360 IKLTYNKGTP ATSYCFNAVG KNLGVIQPTS CLNR* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 8.0e-86 | 29 | 388 | 367 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 3.0e-87 | 55 | 378 | 327 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 7.0e-101 | 27 | 393 | 374 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 9.0e-102 | 20 | 391 | 377 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 0 | 1 | 394 | 394 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_172056.1 | 0 | 1 | 394 | 1 | 394 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | NP_172057.1 | 0 | 1 | 394 | 1 | 394 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | NP_181917.1 | 0 | 6 | 392 | 7 | 392 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | XP_002331633.1 | 0 | 1 | 392 | 1 | 390 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331634.1 | 0 | 1 | 392 | 1 | 390 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2iq7_G | 1e-20 | 41 | 367 | 6 | 323 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 1e-20 | 41 | 367 | 6 | 323 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 1e-20 | 41 | 367 | 6 | 323 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 1e-20 | 41 | 367 | 6 | 323 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_C | 1e-20 | 41 | 367 | 6 | 323 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |