Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10011350m |
Family | CBM43 |
Protein Properties | Length: 335 Molecular Weight: 31813.7 Isoelectric Point: 4.5826 |
Chromosome | Chromosome/Scaffold: 1 Start: 10050553 End: 10052080 |
Description | Carbohydrate-binding X8 domain superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 169 | 250 | 1.4e-32 |
CIAKANASPTSLQVALDYACGYGGADCGQIQQGAACYEPNTIRDHASFAFNSYYQKHPGSDSCNFGGAAQLTSTDPSKGSCH |
Full Sequence |
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Protein Sequence Length: 335 Download |
MTHRIASRCF SIMLLCLLIT SPLHVIAQGQ GGGQGDIPVV NPTAPDGGTT TTPTITQPSP 60 PSSTFPGPTT PTTTPTGGYP PLDGTTPTGG YPPLGGTSPP GGGGDVGGGY GGGGDTGAGG 120 GGGGYGGGAP GGGGGGDTGA GGGGATGGGG GGDTGGGGGG GGGGSGQYCI AKANASPTSL 180 QVALDYACGY GGADCGQIQQ GAACYEPNTI RDHASFAFNS YYQKHPGSDS CNFGGAAQLT 240 STDPSKGSCH FSSSSGTVST SPPSQLSPPD FNSPPSTYPP PITTPNTGIT GSGPPFGVAE 300 PTGLPSSATP VSHSLLSLFT AVGILMPLLR ENYL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 2.0e-20 | 167 | 237 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 9.0e-33 | 167 | 244 | 79 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAG51737.1 | 0 | 1 | 248 | 1 | 228 | AC068667_16 beta-1,3 glucanase, putative; 26636-27432 [Arabidopsis thaliana] |
GenBank | ABK94231.1 | 7.00005e-41 | 166 | 334 | 145 | 304 | unknown [Populus trichocarpa] |
EMBL | CBI30817.1 | 7e-35 | 164 | 334 | 31 | 195 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_174231.2 | 0 | 1 | 334 | 1 | 315 | unknown protein [Arabidopsis thaliana] |
RefSeq | XP_002519744.1 | 6.02558e-44 | 166 | 334 | 113 | 282 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2jon_A | 4e-17 | 164 | 256 | 9 | 101 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |