| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10011405m |
| Family | GH5 |
| Protein Properties | Length: 413 Molecular Weight: 46498.5 Isoelectric Point: 5.0351 |
| Chromosome | Chromosome/Scaffold: 1 Start: 476531 End: 478886 |
| Description | Glycosyl hydrolase superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH5 | 41 | 367 | 2.4e-34 |
| NGEQVYLNGFNAYWMMTTAADTASKGRATVTRALRQASAVGMNVARIWGFNEGDYIPLQISPGSYSEDVFKGLDFVVYEAGRFNIKLIISLVNNYEDYGG RKKYVEWAGLDEPDEFYTNSAVKQFYKNHVKAVLTRKNTITGRMYKDDPTIFSWELINEPRCDDSTDSTILQSWVKEMASFVKSIDSNHLLEIGLEGFYG ESKPERTVYNPGSTVSTGTDFISNNQIPDIDFATIHIYPDSWLPLQSSRTGEQDTFVDRWIAAHIEDCDNIIKKPLLITEFGKSSKYPGFSLEKRNTFFK SVYDVIYDSARSGGSCTGGFFWQLTTN | |||
| Full Sequence |
|---|
| Protein Sequence Length: 413 Download |
| MLNVLPFFFF LLIPFLIGNN RICIAVKTDF VGRNGTQFVL NGEQVYLNGF NAYWMMTTAA 60 DTASKGRATV TRALRQASAV GMNVARIWGF NEGDYIPLQI SPGSYSEDVF KGLDFVVYEA 120 GRFNIKLIIS LVNNYEDYGG RKKYVEWAGL DEPDEFYTNS AVKQFYKNHV KAVLTRKNTI 180 TGRMYKDDPT IFSWELINEP RCDDSTDSTI LQSWVKEMAS FVKSIDSNHL LEIGLEGFYG 240 ESKPERTVYN PGSTVSTGTD FISNNQIPDI DFATIHIYPD SWLPLQSSRT GEQDTFVDRW 300 IAAHIEDCDN IIKKPLLITE FGKSSKYPGF SLEKRNTFFK SVYDVIYDSA RSGGSCTGGF 360 FWQLTTNRTG LLGDGYEVFM QEGPNTTAQL IAEQSSKLRN LKYPPLVTLS AE* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG2730 | BglC | 0.008 | 81 | 367 | 309 | + Endoglucanase [Carbohydrate transport and metabolism] | ||
| pfam00150 | Cellulase | 6.0e-6 | 41 | 326 | 296 | + Cellulase (glycosyl hydrolase family 5). | ||
| COG3934 | COG3934 | 3.0e-26 | 38 | 328 | 294 | + Endo-beta-mannanase [Carbohydrate transport and metabolism] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABG88068.1 | 0 | 1 | 401 | 7 | 409 | endo-1,4-beta-mannanase [Glycine max] |
| EMBL | CAC08442.1 | 0 | 31 | 401 | 45 | 415 | (1-4)-beta-mannan endohydrolase [Coffea arabica] |
| RefSeq | NP_171733.2 | 0 | 17 | 412 | 16 | 411 | glycosyl hydrolase family protein 5 / cellulase family protein / (1-4)-beta-mannan endohydrolase, putative [Arabidopsis thaliana] |
| RefSeq | XP_002302695.1 | 0 | 23 | 411 | 34 | 413 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002515142.1 | 0 | 30 | 401 | 36 | 403 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1rh9_A | 0 | 29 | 401 | 5 | 372 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
| PDB | 3pzq_A | 0 | 39 | 365 | 21 | 343 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
| PDB | 3pzo_A | 0 | 39 | 365 | 21 | 343 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
| PDB | 3pzn_A | 0 | 39 | 365 | 21 | 343 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
| PDB | 3pzm_A | 0 | 39 | 365 | 21 | 343 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
