Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10011469m |
Family | GH28 |
Protein Properties | Length: 507 Molecular Weight: 56237.2 Isoelectric Point: 9.4057 |
Chromosome | Chromosome/Scaffold: 1 Start: 6643352 End: 6645632 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 119 | 467 | 0 |
NSGGGQLNVPPGRWLTAPFNLTSHMTLFLAEDSEILGVEDEKYWPLMPPLPSYGYGRERPGPRYGSLIHGQNLKDIVITGHNGTINGQGQSWWKKHQRRL LNNTRGPLVQIMWSSDIVIANITMRDSPFWTLHPYDCKNVTIKNITILAPVTGAPNTDGIDPDSCEDMVIEDCYISTGDDAIAIKSGWDQFGIAYGRPST NILIRNLIVRSVISAGVSIGSEMSGGISNVTIENLLIWNSRRGIRIKTAPGRGGYIKNITYKNLTLDNVRVGIVIKTDYNEHADDNYDRKAYPTLSGFSF TGIHGQGVRVPVRIHGSEQIPVRNVTFRDMSVGLTYKKKHIFQCSFVKG |
Full Sequence |
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Protein Sequence Length: 507 Download |
MVENLLPSRF QFHLQRLEPR RRLTSLLASH KTTLFTFLWI AAFGSVFLWQ RTAYVGGSGA 60 GPVGGRFTIF GKIKPIQPLP RLRPVVFDLR DFGGVGDGFT LNTEAFERAV VSISKLGSNS 120 GGGQLNVPPG RWLTAPFNLT SHMTLFLAED SEILGVEDEK YWPLMPPLPS YGYGRERPGP 180 RYGSLIHGQN LKDIVITGHN GTINGQGQSW WKKHQRRLLN NTRGPLVQIM WSSDIVIANI 240 TMRDSPFWTL HPYDCKNVTI KNITILAPVT GAPNTDGIDP DSCEDMVIED CYISTGDDAI 300 AIKSGWDQFG IAYGRPSTNI LIRNLIVRSV ISAGVSIGSE MSGGISNVTI ENLLIWNSRR 360 GIRIKTAPGR GGYIKNITYK NLTLDNVRVG IVIKTDYNEH ADDNYDRKAY PTLSGFSFTG 420 IHGQGVRVPV RIHGSEQIPV RNVTFRDMSV GLTYKKKHIF QCSFVKGRVY GPISPRACEN 480 FDVYDEEGRL VKAAAESNVT DIDYDI* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 3.0e-25 | 84 | 397 | 330 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 5.0e-27 | 75 | 478 | 425 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 4.0e-35 | 87 | 450 | 381 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 5.0e-39 | 186 | 466 | 291 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 1.0e-65 | 86 | 404 | 344 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF82228.1 | 0 | 1 | 506 | 1 | 533 | AC069143_4 Contains similarity to a polygalacturonase-like protein gi |
GenBank | AAL91166.1 | 0 | 1 | 506 | 1 | 506 | unknown protein [Arabidopsis thaliana] |
RefSeq | NP_173351.1 | 0 | 1 | 506 | 1 | 506 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002324728.1 | 0 | 1 | 505 | 1 | 494 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002516244.1 | 0 | 11 | 505 | 10 | 493 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0 | 80 | 447 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0 | 80 | 447 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0 | 80 | 447 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0 | 80 | 447 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 2e-18 | 132 | 450 | 52 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO778855 | 451 | 11 | 461 | 0 |
ES913671 | 288 | 194 | 481 | 0 |
EX126330 | 299 | 152 | 450 | 0 |
FN769574 | 320 | 162 | 481 | 0 |
FE707848 | 302 | 88 | 389 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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