Basic Information | |
---|---|
Species | Capsella rubella |
Cazyme ID | Carubv10011686m |
Family | GH28 |
Protein Properties | Length: 293 Molecular Weight: 31715.8 Isoelectric Point: 7.2702 |
Chromosome | Chromosome/Scaffold: 1 Start: 5917912 End: 5919196 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 56 | 290 | 0 |
EDACTWNGPSKMYIPNGRFYLGAVSFAGPCTAGSISFVIDGTLLAPPNNNDIKKETWINFRYIEYLTVSGSGTLDGQGQMSWSLNDCRKNEFCPKLAINM GFDFVKKSRLEGITSLNSKAGHFNFFSVDHFNITGVNIKAPGDSPNTDGIKIALSSNIRISNTNISTGDDCIAMLSGNNNFDIYNVTCGPGHGISIGSLG KNKDEKNVNGLTVRDTVFIGTTDGIRIKTWESSVS |
Full Sequence |
---|
Protein Sequence Length: 293 Download |
MACIDFVFKV SGLTMLFIVG TTSLPTTVPK VFDVQRYGAK GDGKTDNTNA FTNTWEDACT 60 WNGPSKMYIP NGRFYLGAVS FAGPCTAGSI SFVIDGTLLA PPNNNDIKKE TWINFRYIEY 120 LTVSGSGTLD GQGQMSWSLN DCRKNEFCPK LAINMGFDFV KKSRLEGITS LNSKAGHFNF 180 FSVDHFNITG VNIKAPGDSP NTDGIKIALS SNIRISNTNI STGDDCIAML SGNNNFDIYN 240 VTCGPGHGIS IGSLGKNKDE KNVNGLTVRD TVFIGTTDGI RIKTWESSVS TIL 300 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 4.0e-50 | 17 | 291 | 281 | + polygalacturonase ADPG | ||
PLN03010 | PLN03010 | 2.0e-50 | 30 | 286 | 263 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 3.0e-51 | 59 | 292 | 234 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 9.0e-53 | 3 | 286 | 295 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 1.0e-76 | 6 | 288 | 288 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_173158.1 | 0 | 3 | 292 | 4 | 292 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_175003.1 | 0 | 1 | 293 | 1 | 292 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_175004.1 | 0 | 1 | 293 | 1 | 292 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_181560.1 | 0 | 1 | 293 | 1 | 292 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_193112.2 | 0 | 1 | 293 | 1 | 292 | polygalacturonase [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 0.0000000000002 | 123 | 292 | 113 | 291 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 0.00000000004 | 121 | 284 | 72 | 233 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.00000000004 | 121 | 284 | 72 | 233 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.00000000004 | 121 | 284 | 72 | 233 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 0.00000000004 | 121 | 284 | 72 | 233 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |