Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10012094m |
Family | GH28 |
Protein Properties | Length: 424 Molecular Weight: 44892.5 Isoelectric Point: 8.5962 |
Chromosome | Chromosome/Scaffold: 1 Start: 643553 End: 645100 |
Description | polygalacturonase 4 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 78 | 395 | 0 |
QVCESPVPATLLVPKGQFLAGPVIFAGPCKSKVTVDVQGTIIATTSGYATPEWFLFERVDNVHLTGTGTFHGKGEAVWKADGCGKKVQCNLPPTSLKFRN MKNVEIDGITSVNAKAFHMFLVKTENVNVHNIKLLAPAESPNTDGIHLSNADNVKILDSTIATGDDCVSVGRGCNNVTVERVICGPGHGLSIGSLGKYKN EEDVSGIRVNNCTMLETDNGLRIKTWGGSDPSKVVDVKFTNIIMQSVKNPIIIDQNYGSRGGDSRVEITDVLFQNIRGTTITKDIVQLMCSKSVPCRGVN VVDVNLNYVGKPGGEKKS |
Full Sequence |
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Protein Sequence Length: 424 Download |
MANARRLVAK ANNTNVVGSL ILMALVFGSC VANGEYLGGR RGLAANSGNP TVFDITKFGA 60 VGDGSTNSFK AFLNTWIQVC ESPVPATLLV PKGQFLAGPV IFAGPCKSKV TVDVQGTIIA 120 TTSGYATPEW FLFERVDNVH LTGTGTFHGK GEAVWKADGC GKKVQCNLPP TSLKFRNMKN 180 VEIDGITSVN AKAFHMFLVK TENVNVHNIK LLAPAESPNT DGIHLSNADN VKILDSTIAT 240 GDDCVSVGRG CNNVTVERVI CGPGHGLSIG SLGKYKNEED VSGIRVNNCT MLETDNGLRI 300 KTWGGSDPSK VVDVKFTNII MQSVKNPIII DQNYGSRGGD SRVEITDVLF QNIRGTTITK 360 DIVQLMCSKS VPCRGVNVVD VNLNYVGKPG GEKKSSSGGI VGAFCDNANV IFGGKLSFPM 420 CPK* |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
PLN02218 | PLN02218 | 1.0e-81 | 33 | 421 | 402 | + polygalacturonase ADPG |
PLN02155 | PLN02155 | 1.0e-83 | 52 | 385 | 345 | + polygalacturonase |
PLN02793 | PLN02793 | 5.0e-85 | 52 | 383 | 346 | + Probable polygalacturonase |
pfam00295 | Glyco_hydro_28 | 4.0e-88 | 80 | 385 | 311 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
PLN02188 | PLN02188 | 6.0e-110 | 22 | 422 | 410 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABW24665.1 | 0 | 1 | 423 | 1 | 421 | pollen-specific polygalacturonase [Brassica rapa subsp. campestris] |
EMBL | CBI36886.1 | 0 | 1 | 421 | 1 | 414 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_171778.1 | 0 | 1 | 423 | 1 | 422 | PGA4 (POLYGALACTURONASE 4); polygalacturonase [Arabidopsis thaliana] |
RefSeq | XP_002301488.1 | 0 | 69 | 421 | 1 | 352 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002301489.1 | 0 | 16 | 421 | 3 | 412 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-19 | 138 | 365 | 110 | 343 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1rmg_A | 7e-16 | 44 | 383 | 12 | 338 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1ib4_B | 0.00000000000002 | 121 | 384 | 55 | 322 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1ib4_A | 0.00000000000002 | 121 | 384 | 55 | 322 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1ia5_A | 0.00000000000002 | 121 | 384 | 55 | 322 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |