Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10012276m |
Family | GH28 |
Protein Properties | Length: 395 Molecular Weight: 42964.3 Isoelectric Point: 8.9862 |
Chromosome | Chromosome/Scaffold: 1 Start: 19143366 End: 19145017 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 57 | 382 | 0 |
ACARRSGSSKIYVPKGTFYLGGVEFVGPCKNPIEFVIDGTLLAPGNPNDIKQDTWIKFRYINDLSISGFGTLDGQGKQSWPLNDCHKNPNCPKLAMTMGF AFVNNSKIKDITSLNSKMGHFNFFSVHHFNITGVTITAPGDSPNTDGIKMGSCSNIHISNTNIGTGDDCIAILSGTTNLEISNVKCGPGHGISKDVKGLT VRDIVFNGTSDGIRIKTWESSASKILVSDFVYENIQMIDVEKPINIDQKYCPYPPCKHEKKGESHVQIQNLKLKNIYGTSKNKVAVKLQCSKSFPCKNVE LIDINLRHNGLEGGPSTAECRNVDGS |
Full Sequence |
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Protein Sequence Length: 395 Download |
MTSIASTFKT LCLCLLFIVV VSRPTVRPKV FNVKRHGSIP DGITDNANAF TSVWSRACAR 60 RSGSSKIYVP KGTFYLGGVE FVGPCKNPIE FVIDGTLLAP GNPNDIKQDT WIKFRYINDL 120 SISGFGTLDG QGKQSWPLND CHKNPNCPKL AMTMGFAFVN NSKIKDITSL NSKMGHFNFF 180 SVHHFNITGV TITAPGDSPN TDGIKMGSCS NIHISNTNIG TGDDCIAILS GTTNLEISNV 240 KCGPGHGISK DVKGLTVRDI VFNGTSDGIR IKTWESSASK ILVSDFVYEN IQMIDVEKPI 300 NIDQKYCPYP PCKHEKKGES HVQIQNLKLK NIYGTSKNKV AVKLQCSKSF PCKNVELIDI 360 NLRHNGLEGG PSTAECRNVD GSASGKMVPK HCLN* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 7.0e-72 | 23 | 390 | 385 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 3.0e-72 | 6 | 394 | 430 | + Probable polygalacturonase | ||
PLN02155 | PLN02155 | 5.0e-77 | 1 | 394 | 407 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 7.0e-91 | 58 | 384 | 337 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 8.0e-111 | 31 | 392 | 376 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_175003.1 | 0 | 1 | 394 | 1 | 404 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_179147.1 | 0 | 1 | 394 | 1 | 404 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_179149.2 | 0 | 1 | 394 | 1 | 404 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_181560.1 | 0 | 1 | 394 | 1 | 404 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_193112.2 | 0 | 1 | 394 | 1 | 404 | polygalacturonase [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 6e-18 | 109 | 357 | 100 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 0.000000000001 | 127 | 379 | 79 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 0.000000000001 | 127 | 379 | 79 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 0.000000000001 | 127 | 379 | 79 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 0.000000000001 | 127 | 379 | 79 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |