y
Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10012375m |
Family | GH28 |
Protein Properties | Length: 396 Molecular Weight: 41752.8 Isoelectric Point: 10.0543 |
Chromosome | Chromosome/Scaffold: 1 Start: 1772947 End: 1774715 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 53 | 382 | 0 |
QGACVSAASATVVVPKGTFLLKAITFGGPCKSKITFQVSGTVVAPADYRAFGNSGYWILFNKVSKMSLVGGTFDARANGFWSCRNSGQNCPPGVRSISFN SAKDVIISGVKSMNSQVTHMTLNGCTNVVVRNVRLVAPGNSPNTDGFHVQFSTGVTFTGSTVQTGDDCVAIGPGTRNFLITKLACGPGHGVSIGSLAKDL KEDGVENVTLSSSVFTGTQNGVRIKSWARPSTGFVRNVFFQNLIMKNVQNPIIIDQNYCPSHQGCPSEHSGVKISQVTYKNIQGTSATQQAMKLVCSKSN PCTRITLQDIKLTYSKGAPATSYCFNAAGK |
Full Sequence |
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Protein Sequence Length: 396 Download |
MTKPTITFPL LFTLLITFIS VSSSASNAFN VVSFGAKPDG VTDSTAAFLK AWQGACVSAA 60 SATVVVPKGT FLLKAITFGG PCKSKITFQV SGTVVAPADY RAFGNSGYWI LFNKVSKMSL 120 VGGTFDARAN GFWSCRNSGQ NCPPGVRSIS FNSAKDVIIS GVKSMNSQVT HMTLNGCTNV 180 VVRNVRLVAP GNSPNTDGFH VQFSTGVTFT GSTVQTGDDC VAIGPGTRNF LITKLACGPG 240 HGVSIGSLAK DLKEDGVENV TLSSSVFTGT QNGVRIKSWA RPSTGFVRNV FFQNLIMKNV 300 QNPIIIDQNY CPSHQGCPSE HSGVKISQVT YKNIQGTSAT QQAMKLVCSK SNPCTRITLQ 360 DIKLTYSKGA PATSYCFNAA GKSLGVIQPT SCLNR* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 5.0e-82 | 35 | 389 | 362 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 7.0e-86 | 67 | 379 | 318 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 5.0e-91 | 35 | 392 | 363 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02793 | PLN02793 | 3.0e-96 | 35 | 394 | 367 | + Probable polygalacturonase | ||
PLN02155 | PLN02155 | 0 | 35 | 395 | 361 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_172056.1 | 0 | 1 | 395 | 1 | 394 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | NP_172057.1 | 0 | 1 | 395 | 1 | 394 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | NP_181917.1 | 0 | 10 | 393 | 6 | 392 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | XP_002331633.1 | 0 | 1 | 393 | 1 | 390 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331634.1 | 0 | 1 | 393 | 1 | 390 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 7e-21 | 140 | 365 | 148 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1rmg_A | 9e-21 | 25 | 381 | 17 | 355 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 2iq7_G | 2e-20 | 42 | 368 | 6 | 323 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 2e-20 | 42 | 368 | 6 | 323 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 2e-20 | 42 | 368 | 6 | 323 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |