| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10012453m |
| Family | AA3 |
| Protein Properties | Length: 753 Molecular Weight: 82975.6 Isoelectric Point: 8.6252 |
| Chromosome | Chromosome/Scaffold: 1 Start: 1077756 End: 1080479 |
| Description | Long-chain fatty alcohol dehydrogenase family protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| AA3 | 225 | 750 | 0 |
| LKVTEDRESDTYKIECDAVIVGSGCGGGVAAANLAKSGLKVVVLEKGNYFVPRDYSALEGPSTFELFESNSLLMTHDGRFRFMAGSTVGGGSVVNWAASL NTPDAIIEEWSVQRGIAIFSSEKYKAAMDRVCKRIGVTEKIIREGFQNTILRKGCEKLGLDVTTVPRNSTDKHYCGSCSFGCPTGEKRGTDSTWLVDAVN NNAVILTRCKAEKVILADNDAHKRKESGRKKRCLGVTASLSNRTRKKLEINAKVTIIACGSLKTPGLLASSGLKNPNIGRGLHIHPILMAWGYFPERNSD FKGAAHEGEIMTSLHYVHPMDSTTPNITLETPAIGPGTFASLIPWVSGSDIKERLAKYTRTSHIFVMVRDEGVGEVKGDIVKYRLTKADEENLTIGLKQA LQILVAAGATEVGTYRSDGQRIKCDGIKREELEAFLHTVNAPAGVVSMSKHWTHSFTAHQMGCCRMGASEKEGAIDGKGESWEAEDLYVCDASVLPTALG VNPMITVQSTAYCISNRIAELMKKKK | |||
| Full Sequence |
|---|
| Protein Sequence Length: 753 Download |
| MVGRRGSPLL RWSTKHGNVS HGFSQSDLQA LSAICEAILP PVPLQSLDLD MKLKVLRSDA 60 LLSFFKSSPG SHIRPDEVAE LLATKAIPVT VKVVRVVLRI LTFRLGTLLL CGLVSLDKEN 120 WPFLLKFSDI SLEKREKVLQ RWNTQWYNPL ARLGFMMIKA IFLFYYFTWT NENTENPAWD 180 AIGYRVDMGE NEGMEHKERP LEKGIIETAE VDEMTIKQRM INKGLKVTED RESDTYKIEC 240 DAVIVGSGCG GGVAAANLAK SGLKVVVLEK GNYFVPRDYS ALEGPSTFEL FESNSLLMTH 300 DGRFRFMAGS TVGGGSVVNW AASLNTPDAI IEEWSVQRGI AIFSSEKYKA AMDRVCKRIG 360 VTEKIIREGF QNTILRKGCE KLGLDVTTVP RNSTDKHYCG SCSFGCPTGE KRGTDSTWLV 420 DAVNNNAVIL TRCKAEKVIL ADNDAHKRKE SGRKKRCLGV TASLSNRTRK KLEINAKVTI 480 IACGSLKTPG LLASSGLKNP NIGRGLHIHP ILMAWGYFPE RNSDFKGAAH EGEIMTSLHY 540 VHPMDSTTPN ITLETPAIGP GTFASLIPWV SGSDIKERLA KYTRTSHIFV MVRDEGVGEV 600 KGDIVKYRLT KADEENLTIG LKQALQILVA AGATEVGTYR SDGQRIKCDG IKREELEAFL 660 HTVNAPAGVV SMSKHWTHSF TAHQMGCCRM GASEKEGAID GKGESWEAED LYVCDASVLP 720 TALGVNPMIT VQSTAYCISN RIAELMKKKK KD* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| TIGR03970 | Rv0697 | 0.0003 | 651 | 746 | 100 | + dehydrogenase, Rv0697 family. This model describes a set of dehydrogenases belonging to the glucose-methanol-choline oxidoreductase (GMC oxidoreductase) family. Members of the present family are restricted to Actinobacterial genome contexts containing also members of families TIGR03962 and TIGR03969 (the mycofactocin system), and are proposed to be uniform in function. | ||
| pfam05199 | GMC_oxred_C | 2.0e-20 | 605 | 738 | 134 | + GMC oxidoreductase. This domain found associated with pfam00732. | ||
| COG2303 | BetA | 9.0e-22 | 258 | 751 | 557 | + Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | ||
| pfam00732 | GMC_oxred_N | 9.0e-88 | 288 | 511 | 227 | + GMC oxidoreductase. This family of proteins bind FAD as a cofactor. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0009055 | electron carrier activity |
| GO:0016491 | oxidoreductase activity |
| GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAD10696.1 | 0 | 2 | 752 | 7 | 736 | Unknown protein [Arabidopsis thaliana] |
| EMBL | CAN71289.1 | 0 | 4 | 749 | 3 | 738 | hypothetical protein [Vitis vinifera] |
| RefSeq | NP_171895.2 | 0 | 2 | 752 | 7 | 758 | alcohol oxidase-related [Arabidopsis thaliana] |
| RefSeq | XP_002285334.1 | 0 | 4 | 749 | 3 | 738 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002529832.1 | 0 | 8 | 748 | 9 | 743 | electron carrier, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3cox_A | 0.00003 | 242 | 735 | 14 | 494 | A Chain A, The Crystal Structure Of Rice (Oryza Sativa L.) Os4bglu12 |
| PDB | 1coy_A | 0.00003 | 242 | 735 | 14 | 494 | A Chain A, Crystal Structure Of Cholesterol Oxidase Complexed With A Steroid Substrate. Implications For Fad Dependent Alcohol Oxidases |
| PDB | 3t37_A | 0.0003 | 224 | 721 | 4 | 499 | A Chain A, Crystal Structure Of Pyridoxine 4-Oxidase From Mesorbium Loti |
| PDB | 2jbv_B | 0.003 | 617 | 750 | 417 | 530 | A Chain A, Crystal Structure Of Choline Oxidase Reveals Insights Into The Catalytic Mechanism |
| PDB | 2jbv_A | 0.003 | 617 | 750 | 417 | 530 | A Chain A, Crystal Structure Of Choline Oxidase Reveals Insights Into The Catalytic Mechanism |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
 | ||||
| Hit | Length | Start | End | EValue |
| HO794753 | 629 | 121 | 746 | 0 |
| HO779224 | 445 | 215 | 657 | 0 |
| EX275136 | 291 | 452 | 740 | 0 |
| DC883850 | 475 | 289 | 753 | 0 |
| HO811216 | 327 | 422 | 746 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
