y
Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10012514m |
Family | PL1 |
Protein Properties | Length: 456 Molecular Weight: 51004.3 Isoelectric Point: 9.6389 |
Chromosome | Chromosome/Scaffold: 1 Start: 5018525 End: 5020137 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 171 | 368 | 0 |
IFARSMIIKLQQELMIASDKTIDGRGAKVYIMEGAGLTMQYVNNVIIHSIYVKHIVPGNGGLIRDSEHHVGLRTKSDGDGISLFGATNIWIDHVSMTRCA DGMIDAIDGSTAVTISNSHFTDHQEVMLFGARDEHVIDKKMQITVAFNHFGKRLEQRMPRCRYGTIHVVNNDYTHWEMYAIGGNMNPTIISQGNRFIA |
Full Sequence |
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Protein Sequence Length: 456 Download |
MAAVFLNLGV FFLSLLAIVA PQVKAHVAVF DSYWTQRQSD ALKRTMGSYD PNPLNVTNHL 60 NYHVNLAVDA AESFNDTRRE LTQVRSGHRK LKRSGKCLAY NPIDKCWRCD RNWANNRKKL 120 ADCVLGFGRK TTGGKDGPIY VVNDASDNDL VNPKPGTLRY AVTRDGPLWI IFARSMIIKL 180 QQELMIASDK TIDGRGAKVY IMEGAGLTMQ YVNNVIIHSI YVKHIVPGNG GLIRDSEHHV 240 GLRTKSDGDG ISLFGATNIW IDHVSMTRCA DGMIDAIDGS TAVTISNSHF TDHQEVMLFG 300 ARDEHVIDKK MQITVAFNHF GKRLEQRMPR CRYGTIHVVN NDYTHWEMYA IGGNMNPTII 360 SQGNRFIAPP SEQAKQITKR EYTPLAEWKS WNWQSEGDYF LNGAYFVQSG KANAWSPKPQ 420 NPIPNKFAIR PKPGTMVRKL TMEAGALGCR QGQAC* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam04431 | Pec_lyase_N | 4.0e-19 | 26 | 81 | 56 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
COG3866 | PelB | 1.0e-26 | 131 | 366 | 254 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 7.0e-66 | 181 | 366 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 7.0e-78 | 176 | 370 | 206 | + Amb_all domain. |
Gene Ontology | |
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GO Term | Description |
GO:0030570 | pectate lyase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAB69759.1 | 0 | 1 | 455 | 1 | 459 | putative pectate lyase [Arabidopsis thaliana] |
RefSeq | NP_172894.1 | 0 | 1 | 455 | 1 | 459 | AT59; lyase/ pectate lyase [Arabidopsis thaliana] |
RefSeq | NP_178375.1 | 0 | 5 | 455 | 1 | 455 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | XP_002311599.1 | 0 | 11 | 455 | 1 | 429 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002520133.1 | 0 | 4 | 455 | 2 | 440 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 101 | 447 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 101 | 447 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 7e-20 | 131 | 357 | 21 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.000000000000001 | 165 | 366 | 108 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1jta_A | 0.000000000000002 | 179 | 446 | 78 | 358 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |