Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10012551m |
Family | CBM43 |
Protein Properties | Length: 198 Molecular Weight: 20307.8 Isoelectric Point: 4.8986 |
Chromosome | Chromosome/Scaffold: 1 Start: 4821412 End: 4822310 |
Description | Carbohydrate-binding X8 domain superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 23 | 100 | 5.5e-29 |
CVCKDGIGDKELQTAIDYACGTLADCNPIHDKGPCYQPNTIKSHCDWAVNSYFQNAAQVTGSCDFSGTATTNQNPPSN |
Full Sequence |
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Protein Sequence Length: 198 Download |
MEVLLGLLLL LLAFTKSSSA IYCVCKDGIG DKELQTAIDY ACGTLADCNP IHDKGPCYQP 60 NTIKSHCDWA VNSYFQNAAQ VTGSCDFSGT ATTNQNPPSN LATGCIYPSS PSSSTRSPPS 120 TTPPTGTTPP TSNGTTPNTG NPFPGTPLFP GTPPVFGPTG GFNPGNGGSG ASSLVISSVF 180 TLCFSLLAFL WGCDVRL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 2.0e-17 | 22 | 92 | 76 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 3.0e-28 | 22 | 107 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF79417.1 | 0 | 20 | 197 | 76 | 252 | AC068197_27 F16A14.5 [Arabidopsis thaliana] |
GenBank | ACU19899.1 | 4.00001e-41 | 3 | 118 | 2 | 116 | unknown [Glycine max] |
RefSeq | NP_172838.2 | 0 | 20 | 197 | 19 | 192 | beta-1,3-glucanase-related [Arabidopsis thaliana] |
RefSeq | NP_671770.1 | 0 | 15 | 168 | 14 | 147 | glycosyl hydrolase family protein 17 [Arabidopsis thaliana] |
RefSeq | XP_002311337.1 | 8.99634e-43 | 1 | 192 | 1 | 184 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2jon_A | 1e-16 | 15 | 97 | 6 | 89 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |