| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10012595m |
| Family | AA1 |
| Protein Properties | Length: 550 Molecular Weight: 61630.3 Isoelectric Point: 9.2478 |
| Chromosome | Chromosome/Scaffold: 1 Start: 19310864 End: 19312908 |
| Description | SKU5 similar 14 |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| AA1 | 38 | 502 | 0 |
| SPLGVPQKVILINGQFPGPNLNSTSNNNVVINVFNNLDEPFLLTWSGIQHRKNCWQDGVAGTSCPIPAGQNFTYHFQPKDQIGSYFYYPTTSLHRFAGGF GGLRVNSRLLIPVPYADPEDDYTVLLGDWYTTGHTALKKLLDSGRTLGLPNGVLINGKSGKVGGKNEPLFTMKPGKTYKYRLCNVGFKSTLNFRIQNHKM KLVEMEGSHVLQNDYDSLDVHVGQCFSVLVTADQAAKDYYMVASTRFLKKELSTVGVIRYEGSNVQASTELPKTPVGWAWSLNQFRSFRWNLTASAARPN PQGSYHYGKINITRSIKLVNSKSVVDGKVRFGFNGVSHVDTETPLKLAEYFQMAEKVFKYNVIKDEPEAKITALTVQPNVLNITFRTFVEIIFENHEKSM QSFHLDGYSFFAVASEAGKWTPEKRSNYNLLDAVSRHTVQVYPKSWSAILLTFDNAGMWNIRAEN | |||
| Full Sequence |
|---|
| Protein Sequence Length: 550 Download |
| MEGRLLTVLV CLVSTVAIVN AGDPYFFHTW NVTYGTASPL GVPQKVILIN GQFPGPNLNS 60 TSNNNVVINV FNNLDEPFLL TWSGIQHRKN CWQDGVAGTS CPIPAGQNFT YHFQPKDQIG 120 SYFYYPTTSL HRFAGGFGGL RVNSRLLIPV PYADPEDDYT VLLGDWYTTG HTALKKLLDS 180 GRTLGLPNGV LINGKSGKVG GKNEPLFTMK PGKTYKYRLC NVGFKSTLNF RIQNHKMKLV 240 EMEGSHVLQN DYDSLDVHVG QCFSVLVTAD QAAKDYYMVA STRFLKKELS TVGVIRYEGS 300 NVQASTELPK TPVGWAWSLN QFRSFRWNLT ASAARPNPQG SYHYGKINIT RSIKLVNSKS 360 VVDGKVRFGF NGVSHVDTET PLKLAEYFQM AEKVFKYNVI KDEPEAKITA LTVQPNVLNI 420 TFRTFVEIIF ENHEKSMQSF HLDGYSFFAV ASEAGKWTPE KRSNYNLLDA VSRHTVQVYP 480 KSWSAILLTF DNAGMWNIRA ENWERRYLGE QLYVSVLSPE KSLRDEYNIP LNTNLCGIVK 540 GLPLPAVYT* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02354 | PLN02354 | 0 | 17 | 549 | 533 | + copper ion binding / oxidoreductase | ||
| PLN02835 | PLN02835 | 0 | 18 | 537 | 521 | + oxidoreductase | ||
| PLN02991 | PLN02991 | 0 | 17 | 541 | 525 | + oxidoreductase | ||
| PLN02792 | PLN02792 | 0 | 19 | 537 | 523 | + oxidoreductase | ||
| PLN02168 | PLN02168 | 0 | 24 | 540 | 529 | + copper ion binding / pectinesterase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005507 | copper ion binding |
| GO:0016491 | oxidoreductase activity |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAD10639.1 | 0 | 1 | 549 | 1 | 558 | putative pollen specific protein [Arabidopsis thaliana] |
| RefSeq | NP_175953.1 | 0 | 4 | 543 | 6 | 547 | sks12 (SKU5 Similar 12); copper ion binding / oxidoreductase [Arabidopsis thaliana] |
| RefSeq | NP_187948.1 | 0 | 3 | 549 | 4 | 550 | sks13 (SKU5 Similar 13); copper ion binding / oxidoreductase [Arabidopsis thaliana] |
| RefSeq | NP_564697.1 | 0 | 1 | 549 | 1 | 549 | sks14 (SKU5 Similar 14); copper ion binding / oxidoreductase [Arabidopsis thaliana] |
| RefSeq | XP_002299087.1 | 0 | 1 | 549 | 1 | 550 | hypothetical protein POPTRDRAFT_750403 [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1asq_B | 0 | 28 | 509 | 6 | 516 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 1asq_A | 0 | 28 | 509 | 6 | 516 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 1asp_B | 0 | 28 | 509 | 6 | 516 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 1asp_A | 0 | 28 | 509 | 6 | 516 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 1aso_B | 0 | 28 | 509 | 6 | 516 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
