| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10012624m |
| Family | CBM49 |
| Protein Properties | Length: 627 Molecular Weight: 69062.8 Isoelectric Point: 9.2461 |
| Chromosome | Chromosome/Scaffold: 1 Start: 16795245 End: 16797980 |
| Description | glycosyl hydrolase 9C1 |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM49 | 534 | 613 | 4.8e-32 |
| IEFLHSITTNWMAGNTRYYRHKVIIKNNSLKPISDLKLKIEDLSGPIWGVNPTGQKNTYQLPQWQKTLRAGQAYDFVYVQ | |||
| GH9 | 30 | 491 | 0 |
| NYGNALDKTFLFFEAQRSGKLPAAQRVKWRSHSGLKDGLAQGVSLEGGYYDAGDHVKFGLPMAFAVTMLSWAAVDHRKELSASNQMQQTLWSIRWGTDYF IKAHPQPNVLWGQVGDGESDHYCWERAEDMTTSRTAYKLDQYHPGSDLAGETAAALAAASLAFKPFNSSYSALLLSHAKELFSFADKYRGLYTDSIPNAK AFYMSSGYSDELLWAAAWLHRATGDQYYLKYAMDNAGYMGGTGWGMKEFSWDNKYAGVQILLSKVLLEGKGGAYTSTLKQYQMKADYFACACLKKNGGYN IQTTAGGLMYVREWNNLQYASAAAYLLAVYSDYLSAANAKLNCPDGSVQPQALLDFARSQADYILGKNRQGMSYVVGYGPKYPIRVHHRGSSIPSIFAQR SSVKCVQGFDSWYRRSQADPNVIYGALVGGPDQNDYYSDDRSNYEQSEPTLSGTAPLVGLFA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 627 Download |
| MSKFGGSLFG VSLLLTVLLA AATAAAEYYN YGNALDKTFL FFEAQRSGKL PAAQRVKWRS 60 HSGLKDGLAQ GVSLEGGYYD AGDHVKFGLP MAFAVTMLSW AAVDHRKELS ASNQMQQTLW 120 SIRWGTDYFI KAHPQPNVLW GQVGDGESDH YCWERAEDMT TSRTAYKLDQ YHPGSDLAGE 180 TAAALAAASL AFKPFNSSYS ALLLSHAKEL FSFADKYRGL YTDSIPNAKA FYMSSGYSDE 240 LLWAAAWLHR ATGDQYYLKY AMDNAGYMGG TGWGMKEFSW DNKYAGVQIL LSKVLLEGKG 300 GAYTSTLKQY QMKADYFACA CLKKNGGYNI QTTAGGLMYV REWNNLQYAS AAAYLLAVYS 360 DYLSAANAKL NCPDGSVQPQ ALLDFARSQA DYILGKNRQG MSYVVGYGPK YPIRVHHRGS 420 SIPSIFAQRS SVKCVQGFDS WYRRSQADPN VIYGALVGGP DQNDYYSDDR SNYEQSEPTL 480 SGTAPLVGLF AKLSGNLGSY GGGSYKPYQT TKPPASSYKA TATTYSPKQS GAQIEFLHSI 540 TTNWMAGNTR YYRHKVIIKN NSLKPISDLK LKIEDLSGPI WGVNPTGQKN TYQLPQWQKT 600 LRAGQAYDFV YVQGGPQAKV LVLSYN* 660 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00759 | Glyco_hydro_9 | 6.0e-177 | 30 | 491 | 464 | + Glycosyl hydrolase family 9. | ||
| PLN02340 | PLN02340 | 0 | 27 | 626 | 600 | + endoglucanase | ||
| PLN02171 | PLN02171 | 0 | 29 | 625 | 601 | + endoglucanase | ||
| PLN02420 | PLN02420 | 0 | 29 | 492 | 466 | + endoglucanase | ||
| PLN00119 | PLN00119 | 0 | 30 | 492 | 463 | + endoglucanase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005576 | extracellular region |
| GO:0005975 | carbohydrate metabolic process |
| GO:0030246 | carbohydrate binding |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAG29742.1 | 0 | 1 | 626 | 1 | 623 | AC084414_10 endo-beta-1,4-glucanase, putative [Arabidopsis thaliana] |
| EMBL | CBI27137.1 | 0 | 11 | 626 | 11 | 615 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_175323.1 | 0 | 1 | 626 | 1 | 627 | AtGH9C1 (Arabidopsis thaliana glycosyl hydrolase 9C1); catalytic/ hydrolase, hydrolyzing O-glycosyl compounds |
| RefSeq | XP_002310080.1 | 0 | 26 | 626 | 23 | 611 | glycosyl hydrolase family 9 [Populus trichocarpa] |
| RefSeq | XP_002527135.1 | 0 | 9 | 626 | 6 | 620 | endo-1,4-beta-glucanase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1ksd_A | 0 | 29 | 477 | 3 | 412 | A Chain A, Crystal Structure Of A Family Gh-19 Chitinase From Rye Seeds |
| PDB | 1ksc_A | 0 | 29 | 477 | 3 | 412 | A Chain A, Crystal Structure Of A Family Gh-19 Chitinase From Rye Seeds |
| PDB | 1ks8_A | 0 | 29 | 477 | 3 | 412 | A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes Takasagoensis, At Ph 2.5. |
| PDB | 2xfg_A | 0 | 29 | 493 | 24 | 459 | B Chain B, Reassembly And Co-Crystallization Of A Family 9 Processive Endoglucanase From Separately Expressed Gh9 And Cbm3c Modules |
| PDB | 4tf4_B | 0 | 29 | 552 | 4 | 502 | B Chain B, Reassembly And Co-Crystallization Of A Family 9 Processive Endoglucanase From Separately Expressed Gh9 And Cbm3c Modules |
