Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10013000m |
Family | GT5 |
Protein Properties | Length: 805 Molecular Weight: 88862 Isoelectric Point: 6.1093 |
Chromosome | Chromosome/Scaffold: 3 Start: 300887 End: 305804 |
Description | starch synthase 2 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT5 | 314 | 797 | 0 |
NVILVAAECAPFSKTGGLGDVAGALPKALARRGHRVMVVVPRYAEYAEAKDIGVRKRYMVAGQDMEVMYFHAYIDGVDFVFIDSPVFRHLSNNIYGGDRL DILKRMVLFCKAAVEVPWYVPCGGVCYGDGNLAFIANDWHTALLPVYLKAYYRDHGMMKYTRSVLVIHNIAHQGRGPVDDFSCVDLPSHYLDTFKLYDPV GGEHFNIFAAGLKAADRVLTVSHGYSWEVKTLEGGWGLHNIINENDWKFRGIVNGIDTKEWNPEFDNHLHSDDYTNYSVETLEIGKPQCKAALQKELGLP VRPDVPLIGFIGRLDHQKGVDLIAEAVPWMMSQDVQLVMLGTGRPDLEELLRQMEHQYRDKARGWVGFSVKTAHRITAGADILLMPSRFEPCGLNQLYAM NYGTIPVVHAVGGLRDTVQQFDPYSETGLGWTFDSAEAGKLIHALGNCLLTYREYKKSWEGLQRRGMTQDLSWDNAAEKYEEVL |
Full Sequence |
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Protein Sequence Length: 805 Download |
MASVAESSFP LLYQIKTQRR VTSSSTLRNS SLVRVSYPDG SLSFRGRSFV LGHRWKCVRR 60 FEATGSGSSE SASGDEPEDA LQATIEKSKK VLAMQRNLLQ QIAERRKLVS SIKESTPNLD 120 DGEASSKEEY DDSSVNANTN ATKKEKMDGD VNGSVSPDSY GKSSLNKETE AQTSSLGTDS 180 LKKSKQSSAA VRSSSTVTSP EKPSSVATNG KPWSSVVASS LDPPYKPSST LTSSEKTSDP 240 VVSPGKPSNS HAGAFWSDPL PSYLTKAPET STIETEKYME TREENNPEEA SSESNEPGKD 300 EEMPPPLAGA NVMNVILVAA ECAPFSKTGG LGDVAGALPK ALARRGHRVM VVVPRYAEYA 360 EAKDIGVRKR YMVAGQDMEV MYFHAYIDGV DFVFIDSPVF RHLSNNIYGG DRLDILKRMV 420 LFCKAAVEVP WYVPCGGVCY GDGNLAFIAN DWHTALLPVY LKAYYRDHGM MKYTRSVLVI 480 HNIAHQGRGP VDDFSCVDLP SHYLDTFKLY DPVGGEHFNI FAAGLKAADR VLTVSHGYSW 540 EVKTLEGGWG LHNIINENDW KFRGIVNGID TKEWNPEFDN HLHSDDYTNY SVETLEIGKP 600 QCKAALQKEL GLPVRPDVPL IGFIGRLDHQ KGVDLIAEAV PWMMSQDVQL VMLGTGRPDL 660 EELLRQMEHQ YRDKARGWVG FSVKTAHRIT AGADILLMPS RFEPCGLNQL YAMNYGTIPV 720 VHAVGGLRDT VQQFDPYSET GLGWTFDSAE AGKLIHALGN CLLTYREYKK SWEGLQRRGM 780 TQDLSWDNAA EKYEEVLVAA KYQW* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PRK14099 | PRK14099 | 2.0e-88 | 313 | 801 | 516 | + glycogen synthase; Provisional | ||
COG0297 | GlgA | 4.0e-136 | 313 | 795 | 493 | + Glycogen synthase [Carbohydrate transport and metabolism] | ||
PRK00654 | glgA | 2.0e-173 | 313 | 796 | 493 | + glycogen synthase; Provisional | ||
TIGR02095 | glgA | 0 | 313 | 800 | 492 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
cd03791 | GT1_Glycogen_synthase_DULL1_like | 0 | 314 | 797 | 495 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. |
Gene Ontology | |
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GO Term | Description |
GO:0009058 | biosynthetic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABV25894.1 | 0 | 8 | 804 | 6 | 751 | starch synthase isoform II [Manihot esculenta] |
GenBank | ACL98480.1 | 0 | 5 | 804 | 15 | 774 | starch synthase IIa-2 precursor [Glycine max] |
RefSeq | NP_186767.1 | 0 | 1 | 804 | 1 | 792 | AtSS2 (starch synthase 2); transferase, transferring glycosyl groups [Arabidopsis thaliana] |
RefSeq | XP_002278470.1 | 0 | 8 | 804 | 28 | 772 | PREDICTED: similar to starch synthase [Vitis vinifera] |
RefSeq | XP_002531856.1 | 0 | 1 | 804 | 1 | 754 | starch synthase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3vuf_A | 0 | 313 | 798 | 10 | 509 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3vue_A | 0 | 313 | 798 | 10 | 509 | A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I Catalytic Domain |
PDB | 3d1j_A | 0 | 313 | 796 | 1 | 472 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 3guh_A | 0 | 313 | 796 | 1 | 472 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 2r4u_A | 0 | 313 | 796 | 1 | 472 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO777841 | 319 | 487 | 805 | 0 |
HO777841 | 414 | 83 | 495 | 0 |
HO781048 | 394 | 412 | 805 | 0 |
HO445868 | 438 | 368 | 805 | 0 |
HO781048 | 38 | 375 | 412 | 0.024 |
Sequence Alignments (This image is cropped. Click for full image.) |
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