| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10013012m |
| Family | GT41 |
| Protein Properties | Length: 791 Molecular Weight: 88099.8 Isoelectric Point: 6.1796 |
| Chromosome | Chromosome/Scaffold: 3 Start: 3720001 End: 3725870 |
| Description | Tetratricopeptide repeat (TPR)-like superfamily protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
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| Family | Start | End | Evalue |
| GT41 | 359 | 779 | 0 |
| PNFAQSLNNLGVVYTVQGKMDAAASMIEKAILANPTYAEAFNNLGVLYRDAGNITMAIDAYEECLKIDPDSRNAGQNRLLAMNYINEGLDDKLFEAHRDW GWRFTRLHPQYTSWDNLKDPERPITIGYISPDFFTHSVSYFIEAPLTHHDYTKYKVVVYSAVVKADAKTYRFRDKVLKKGGVWKDIYGIDEKKIASMVRE DKIDILVELTGHTANNKLGTMACRPAPVQVTWIGYPNTTGLPTVDYRITDSLADPLDTKQKQVEELVRLPESFLCYTPSPEAGPVCPTPALSNGFVTFGS FNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSIRQRFLTTLEQLGLESKRVDLLPLILFNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVP CVTMAGSVHAHNVGVSLLTKV | |||
| Full Sequence |
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| Protein Sequence Length: 791 Download |
| MVGLEDNAEK ERSPVVENGF SNGSRSSPST DVLSPSQKAI QGNDTLSYAN ILRARNKFAD 60 ALALYETMLE KDSKNVEAHI GKGICLQTQN KGNLAFDCFS EAIRLDPHNA CALTHCGILH 120 KEEGRLVEAA ESYQKALMAD ASYKPAAECL AIVLTDLGTS LKLAGNTQEG IQKYYEALKI 180 DPHYAPAYYN LGVVYSEMMQ YDNALSCYEK AALERPMYAE AYCNMGVIYK NRGDLEMAIT 240 CYERCLAVSP NFEIAKNNMA IALTDLGTKV KLEGDVTQGV AYYKKALYYN WHYADAMYNL 300 GVAYGEMLKF DMAIVFYELA FNFNPHCAEA CNNLGVLYKD RDNLDKAVEC YQMALSIKPN 360 FAQSLNNLGV VYTVQGKMDA AASMIEKAIL ANPTYAEAFN NLGVLYRDAG NITMAIDAYE 420 ECLKIDPDSR NAGQNRLLAM NYINEGLDDK LFEAHRDWGW RFTRLHPQYT SWDNLKDPER 480 PITIGYISPD FFTHSVSYFI EAPLTHHDYT KYKVVVYSAV VKADAKTYRF RDKVLKKGGV 540 WKDIYGIDEK KIASMVREDK IDILVELTGH TANNKLGTMA CRPAPVQVTW IGYPNTTGLP 600 TVDYRITDSL ADPLDTKQKQ VEELVRLPES FLCYTPSPEA GPVCPTPALS NGFVTFGSFN 660 NLAKITPKVL QVWARILCAV PNSRLVVKCK PFCCDSIRQR FLTTLEQLGL ESKRVDLLPL 720 ILFNHDHMQA YSLMDISLDT FPYAGTTTTC ESLYMGVPCV TMAGSVHAHN VGVSLLTKVG 780 KLSAKFGFFS * |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| TIGR02917 | PEP_TPR_lipo | 2.0e-18 | 37 | 428 | 399 | + putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. | ||
| TIGR02917 | PEP_TPR_lipo | 3.0e-19 | 49 | 424 | 413 | + putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. | ||
| TIGR02917 | PEP_TPR_lipo | 4.0e-25 | 46 | 428 | 411 | + putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. | ||
| COG3914 | Spy | 5.0e-74 | 311 | 780 | 499 | + Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | ||
| Gene Ontology | |
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| GO Term | Description |
| GO:0005515 | protein binding |
| Annotations - NR Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAX46402.1 | 0 | 10 | 780 | 12 | 788 | putative SPINDLY protein [Rosa luciae] |
| RefSeq | NP_187761.1 | 0 | 1 | 780 | 1 | 781 | SPY (SPINDLY); protein N-acetylglucosaminyltransferase/ protein binding / transferase, transferring glycosyl groups [Arabidopsis thaliana] |
| Swiss-Prot | O82039 | 0 | 10 | 785 | 12 | 793 | SPY_PETHY RecName: Full=Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY; AltName: Full=PhSPY |
| RefSeq | XP_002281883.1 | 0 | 10 | 785 | 12 | 791 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002530535.1 | 0 | 10 | 780 | 12 | 787 | o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 4gz6_D | 4e-36 | 293 | 632 | 8 | 386 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 4gz6_D | 1e-17 | 107 | 263 | 6 | 155 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 4gz6_D | 0.000000000000003 | 154 | 325 | 12 | 185 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 4gz6_D | 0.00000000002 | 586 | 782 | 477 | 648 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 4gz6_D | 0.000000002 | 182 | 335 | 6 | 152 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| DY295408 | 368 | 424 | 785 | 0 |
| GT041789 | 337 | 339 | 675 | 0 |
| GO867600 | 327 | 315 | 641 | 0 |
| GT041789 | 109 | 166 | 272 | 0.00000000000006 |
| GT041789 | 125 | 230 | 352 | 0.00001 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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