| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10013187m |
| Family | GT1 |
| Protein Properties | Length: 643 Molecular Weight: 69833.8 Isoelectric Point: 6.9595 |
| Chromosome | Chromosome/Scaffold: 3 Start: 2250764 End: 2254947 |
| Description | UDP-Glycosyltransferase superfamily protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
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| Family | Start | End | Evalue |
| GT1 | 205 | 612 | 0 |
| VGTRGDVQPFVAIAKRLQDYGHRVRLATHANFKEFVLTAGLEFYPLGGDPKVLAGYMVKNKGFLPSGPSEIPIQRNQMKDIIYSLLPACKEPDPDSGISF KADAIIANPPAYGHTHVAEALKIPIHVFFTMPWTPTSEFPHPLSRVKQPAGYRLSYQIVDSLIWLGIRDMVNDLRKKKLKLRPVTYLSGTQGSGSNIPHG YMWSPHLVPKPKDWGPQIDVVGFCFLDLASNYEPPAELVEWLEAGDKPIYIGFGSLPVQEPEKMTEIIVEALQRTKQRGIINKGWGGLGNLKEPKDFVYL LDNVPHDWLFPRCKAVVHHGGAGTTAAGLKASCPTTIVPFFGDQPFWGERVHARGVGPAPIPVDEFSLHKLEDAINYMLDEKVKSNAETLAKAMKDEDGV AGAVKAFF | |||
| Full Sequence |
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| Protein Sequence Length: 643 Download |
| MPEISPADLS RLSSPSSSSS SSSSGRASVQ IEEIEGGAVG AIGGASGVVI GSEELETNPK 60 TLADNTVAES SGSGNKSFSR VWTMPVEGSS SSERGEPSST ATTTKQPRLQ KSKTERQQKV 120 THILAEDAAK IFDDKISAGK KLKLLNRIAT VKHDGTVEFD VPADAIPQPI VVDREGSKNG 180 FCADESIDGI DLQYIPPMQI VMLIVGTRGD VQPFVAIAKR LQDYGHRVRL ATHANFKEFV 240 LTAGLEFYPL GGDPKVLAGY MVKNKGFLPS GPSEIPIQRN QMKDIIYSLL PACKEPDPDS 300 GISFKADAII ANPPAYGHTH VAEALKIPIH VFFTMPWTPT SEFPHPLSRV KQPAGYRLSY 360 QIVDSLIWLG IRDMVNDLRK KKLKLRPVTY LSGTQGSGSN IPHGYMWSPH LVPKPKDWGP 420 QIDVVGFCFL DLASNYEPPA ELVEWLEAGD KPIYIGFGSL PVQEPEKMTE IIVEALQRTK 480 QRGIINKGWG GLGNLKEPKD FVYLLDNVPH DWLFPRCKAV VHHGGAGTTA AGLKASCPTT 540 IVPFFGDQPF WGERVHARGV GPAPIPVDEF SLHKLEDAIN YMLDEKVKSN AETLAKAMKD 600 EDGVAGAVKA FFKHLPSTKQ NLPDPVPEAP GFLSFRRCFG LS* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| TIGR01426 | MGT | 0.003 | 203 | 615 | 428 | + glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production [Cellular processes, Toxin production and resistance]. | ||
| COG1819 | COG1819 | 1.0e-37 | 197 | 619 | 435 | + Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms] | ||
| pfam03033 | Glyco_transf_28 | 5.0e-38 | 200 | 344 | 145 | + Glycosyltransferase family 28 N-terminal domain. The glycosyltransferase family 28 includes monogalactosyldiacylglycerol synthase (EC 2.4.1.46) and UDP-N-acetylglucosamine transferase (EC 2.4.1.-). This N-terminal domain contains the acceptor binding site and likely membrane association site. This family also contains a large number of proteins that probably have quite distinct activities. | ||
| cd03784 | GT1_Gtf_like | 2.0e-124 | 198 | 614 | 421 | + This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics. | ||
| Gene Ontology | |
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| GO Term | Description |
| GO:0005975 | carbohydrate metabolic process |
| GO:0008152 | metabolic process |
| GO:0016758 | transferase activity, transferring hexosyl groups |
| GO:0030259 | lipid glycosylation |
| Annotations - NR Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAL09737.1 | 0 | 84 | 642 | 1 | 555 | AT3g07020/F17A9_17 [Arabidopsis thaliana] |
| DDBJ | BAH56996.1 | 0 | 1 | 539 | 1 | 534 | AT3G07020 [Arabidopsis thaliana] |
| EMBL | CAB06082.1 | 0 | 1 | 642 | 1 | 637 | UDP-glucose:sterol glucosyltransferase [Arabidopsis thaliana] |
| RefSeq | NP_566297.2 | 0 | 1 | 642 | 1 | 637 | UDP-glucose:sterol glucosyltransferase (UGT80A2) [Arabidopsis thaliana] |
| RefSeq | NP_850529.1 | 0 | 1 | 642 | 1 | 637 | UDP-glucose:sterol glucosyltransferase (UGT80A2) [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3h4t_A | 2e-33 | 198 | 623 | 1 | 389 | A Chain A, X-Ray Crystal Structure Of Tdp-Vancosaminyltransferase Gtfd As A Complex With Tdp And The Natural Substrate, Desvancosaminyl Vancomycin. |
| PDB | 3h4i_A | 2e-33 | 198 | 623 | 1 | 389 | A Chain A, Chimeric Glycosyltransferase For The Generation Of Novel Natural Products |
| PDB | 1rrv_B | 9e-25 | 198 | 595 | 1 | 380 | A Chain A, X-Ray Crystal Structure Of Tdp-Vancosaminyltransferase Gtfd As A Complex With Tdp And The Natural Substrate, Desvancosaminyl Vancomycin. |
| PDB | 1rrv_A | 9e-25 | 198 | 595 | 1 | 380 | A Chain A, X-Ray Crystal Structure Of Tdp-Vancosaminyltransferase Gtfd As A Complex With Tdp And The Natural Substrate, Desvancosaminyl Vancomycin. |
| PDB | 1pnv_B | 3e-21 | 198 | 623 | 1 | 395 | A Chain A, X-Ray Crystal Structure Of Tdp-Vancosaminyltransferase Gtfd As A Complex With Tdp And The Natural Substrate, Desvancosaminyl Vancomycin. |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| GT046352 | 335 | 207 | 541 | 0 |
| GO883166 | 334 | 160 | 493 | 0 |
| DY295142 | 407 | 103 | 509 | 0 |
| CX664063 | 295 | 297 | 591 | 0 |
| GT046352 | 32 | 534 | 565 | 0.0002 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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