Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10013226m |
Family | CE8 |
Protein Properties | Length: 624 Molecular Weight: 67991.1 Isoelectric Point: 9.4067 |
Chromosome | Chromosome/Scaffold: 3 Start: 4895083 End: 4898251 |
Description | pectin methylesterase 3 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 313 | 607 | 0 |
ATVAADGSGTFKTVAAAVAAAPENSNKRYVIHIKAGVYRENVDVSKKKKNIMFMGDGRTRTIITGNRNVVDGSTTFHSATVAAVGERFLARDITFQNTAG PSKHQAVALRVGSDFSAFYNCDMLAYQDTLYVHSNRQFFVKCLIAGTVDFIFGNAAVVLQDCDIHARRPNSGQKNMVTAQGRTDPNQNTGIVIQKCRIGA TSDLQAVKGSFPTYLGRPWKEYSQTVIMQSAISDVIRPEGWSEWTGTFALNTLTYREYANTGAGAGTANRVKWRGFKVITAAAEAQKYTASQFIG |
Full Sequence |
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Protein Sequence Length: 624 Download |
LCLNFKFNQN IVYINTNSDE YIHHSHQWHK TMAPSMKEIF SKDNFKKNKK FVLLSAAVAL 60 LFVAAVAGIS AGASKANEKR PLSPSSHAVL RSSCSSTLYP ELCISAVATA GGVELTSQKD 120 VIEASLNLTK TAVEHNYFTV RKLIKKRKGL TPREKTALHD CLETIDETLD ELHDAVEDLH 180 LYPTKKTLRQ HAGDLKTLIS SAITNQETCL DGFSHDGADK QVRKALLKGQ IHVEHMCSNA 240 LAMIKNMTDT DIANFEAKAK VTSNNRKLKE ENQETTVAVD IAGAGELDAQ GWPTWLSAGD 300 RRLLQGTGVR ADATVAADGS GTFKTVAAAV AAAPENSNKR YVIHIKAGVY RENVDVSKKK 360 KNIMFMGDGR TRTIITGNRN VVDGSTTFHS ATVAAVGERF LARDITFQNT AGPSKHQAVA 420 LRVGSDFSAF YNCDMLAYQD TLYVHSNRQF FVKCLIAGTV DFIFGNAAVV LQDCDIHARR 480 PNSGQKNMVT AQGRTDPNQN TGIVIQKCRI GATSDLQAVK GSFPTYLGRP WKEYSQTVIM 540 QSAISDVIRP EGWSEWTGTF ALNTLTYREY ANTGAGAGTA NRVKWRGFKV ITAAAEAQKY 600 TASQFIGGGG WLSSTGFPFT LGL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02201 | PLN02201 | 2.0e-155 | 153 | 623 | 484 | + probable pectinesterase/pectinesterase inhibitor | ||
PLN02484 | PLN02484 | 5.0e-171 | 79 | 623 | 549 | + probable pectinesterase/pectinesterase inhibitor | ||
PLN02301 | PLN02301 | 8.0e-179 | 77 | 623 | 551 | + pectinesterase/pectinesterase inhibitor | ||
PLN02313 | PLN02313 | 0 | 32 | 623 | 599 | + Pectinesterase/pectinesterase inhibitor | ||
pfam01095 | Pectinesterase | 0 | 312 | 608 | 297 | + Pectinesterase. |
Gene Ontology | |
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GO Term | Description |
GO:0004857 | enzyme inhibitor activity |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAC50023.1 | 0 | 82 | 623 | 49 | 582 | ATPME2 precursor [Arabidopsis thaliana] |
GenBank | AAC72288.1 | 0 | 32 | 623 | 1 | 592 | putative pectin methylesterase [Arabidopsis thaliana] |
EMBL | CAB95025.1 | 0 | 82 | 623 | 54 | 579 | pectin methylesterase [Nicotiana tabacum] |
RefSeq | NP_175786.1 | 0 | 32 | 623 | 1 | 587 | ATPME2; pectinesterase [Arabidopsis thaliana] |
RefSeq | NP_188048.1 | 0 | 32 | 623 | 1 | 592 | ATPME3; pectinesterase [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 309 | 623 | 5 | 319 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 0 | 309 | 623 | 1 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1qjv_B | 4e-25 | 316 | 607 | 12 | 335 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 4e-25 | 316 | 607 | 12 | 335 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 2ntq_B | 7e-25 | 316 | 607 | 12 | 335 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |