Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10013229m |
Family | GT47 |
Protein Properties | Length: 622 Molecular Weight: 70855.7 Isoelectric Point: 7.9002 |
Chromosome | Chromosome/Scaffold: 3 Start: 14776696 End: 14779159 |
Description | Exostosin family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 155 | 494 | 0 |
GKYIYVHNLPSKFNEDMLRDCKKLSLWTNMCKFTTNAGLGPPLENVEGVFSDEGWYATNQFAVDVIFSNRMKQYKCLTNDSSLAAAIFVPFYAGFDIARY LWGYNISRRDAASLELVDWLMKRPEWEIMKGKDHFLVAGRITWDFRRLSEEETDWGNKLLFLPAAKNMSMLVVESSPWNANDFGIPYPTYFHPAKDSEVF EWQDRMRNLERKWLFSFAGAPRPDNPKSIRGQIIDQCRNSNVGKLLECDFGESKCHAPSSIMQMFQSSLFCLQPQGDSYTRRSAFDSMLAGCIPVFFHPG SAYTQYTWHLPKNYTTYSVFIPEDDIRKRNISIEERLLQI |
Full Sequence |
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Protein Sequence Length: 622 Download |
MIPRVAMRRR SAEVAPTEPM EKGNGKSQTN RICVLVALSL FFWALLLYFH FVVLGSSSVI 60 DKQIQLQPSY AQSQPSSVSL RVDKFPIEPH AAPSKPPKEP LVTIDKPKPV LPPAPVANST 120 STFKPPKIVE SGQKQEFSFI RALKTVDNKS DPCGGKYIYV HNLPSKFNED MLRDCKKLSL 180 WTNMCKFTTN AGLGPPLENV EGVFSDEGWY ATNQFAVDVI FSNRMKQYKC LTNDSSLAAA 240 IFVPFYAGFD IARYLWGYNI SRRDAASLEL VDWLMKRPEW EIMKGKDHFL VAGRITWDFR 300 RLSEEETDWG NKLLFLPAAK NMSMLVVESS PWNANDFGIP YPTYFHPAKD SEVFEWQDRM 360 RNLERKWLFS FAGAPRPDNP KSIRGQIIDQ CRNSNVGKLL ECDFGESKCH APSSIMQMFQ 420 SSLFCLQPQG DSYTRRSAFD SMLAGCIPVF FHPGSAYTQY TWHLPKNYTT YSVFIPEDDI 480 RKRNISIEER LLQIPSEQVK IMRENVINLI PRLIYADPRS ELETQKDAFD VSVQAVIDKV 540 TRLRKNMIEG RTEYDYFVEE NSWKYALLEE GQREAGGHVW DPFFSKPKPG EDGSSDSNAG 600 TTISADAAKN SWKSEQRDKT Q* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam03016 | Exostosin | 1.0e-69 | 152 | 494 | 358 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAD21751.1 | 0 | 20 | 621 | 1 | 600 | unknown protein [Arabidopsis thaliana] |
DDBJ | BAE98519.1 | 0 | 1 | 621 | 1 | 619 | hypothetical protein [Arabidopsis thaliana] |
DDBJ | BAH19963.1 | 0 | 152 | 621 | 1 | 470 | AT2G20370 [Arabidopsis thaliana] |
RefSeq | NP_179627.2 | 0 | 1 | 621 | 1 | 619 | MUR3 (MURUS 3); catalytic/ transferase, transferring glycosyl groups [Arabidopsis thaliana] |
RefSeq | XP_002301846.1 | 0 | 20 | 620 | 1 | 585 | glycosyltransferase, CAZy family GT47 [Populus trichocarpa] |