Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10013297m |
Family | CE8 |
Protein Properties | Length: 591 Molecular Weight: 64026.9 Isoelectric Point: 9.3954 |
Chromosome | Chromosome/Scaffold: 3 Start: 4890624 End: 4892958 |
Description | pectin methylesterase 1 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 284 | 575 | 0 |
NVTVAADGSGDVKTVNEAVARVPKKGKTMFVIYVKAGTYVENVLMDKSKWNVIIYGDGKDKTIISGSKNFVDGTPTFQTATFAIQGKGFMMKDIGIINTA GAAKHQAVAFRSGSDFSVYYQCSFDGFQDTLYPHSNRQFYRNCDVTGTIDFIFGAATVVFQGCNIRPRQPLPNQFNTITAEGKKDQNQNSGLSIQRCTIS ANGNVTAPTYLGRPWKEFSTTVIMQSVIGPIVKPAGWMSWVSGVDPPASILYGEYKNSGPGSDVTNRVKWAGYKPVMSDAEAARFTVANFLR |
Full Sequence |
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Protein Sequence Length: 591 Download |
MDTVKSINKG YGKVDEAQDL ALKRKTRKRL IYIGVSVAVL VAIIISSVVA VAVHSRRNNS 60 PKSTPSTVPE LTPAASLRTV CSVTRFPASC ISSISKLPSS NTTDPEVLFK LSLKVVVDEL 120 NSISDLPRKL AEGTDDERIK SALGVCGDLF DDAIDRVNET VSAMDVGDGK NILNSTKIDD 180 LKTWLSAAVT DHDTCLDALD ELSQNKTEYA NSTISLKLKS AMVNSTEFTS NSLAIVAKIL 240 STLSDFGIPI HRRRLLNSNS ADSFPNWVSP GVRRLLQAKK LTPNVTVAAD GSGDVKTVNE 300 AVARVPKKGK TMFVIYVKAG TYVENVLMDK SKWNVIIYGD GKDKTIISGS KNFVDGTPTF 360 QTATFAIQGK GFMMKDIGII NTAGAAKHQA VAFRSGSDFS VYYQCSFDGF QDTLYPHSNR 420 QFYRNCDVTG TIDFIFGAAT VVFQGCNIRP RQPLPNQFNT ITAEGKKDQN QNSGLSIQRC 480 TISANGNVTA PTYLGRPWKE FSTTVIMQSV IGPIVKPAGW MSWVSGVDPP ASILYGEYKN 540 SGPGSDVTNR VKWAGYKPVM SDAEAARFTV ANFLRGADWL PVTGVPYQQT * 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02301 | PLN02301 | 5.0e-150 | 134 | 589 | 463 | + pectinesterase/pectinesterase inhibitor | ||
PLN02745 | PLN02745 | 1.0e-150 | 11 | 586 | 609 | + Putative pectinesterase/pectinesterase inhibitor | ||
PLN02314 | PLN02314 | 0 | 1 | 590 | 591 | + pectinesterase | ||
PLN02468 | PLN02468 | 0 | 9 | 588 | 587 | + putative pectinesterase/pectinesterase inhibitor | ||
pfam01095 | Pectinesterase | 0 | 284 | 576 | 298 | + Pectinesterase. |
Gene Ontology | |
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GO Term | Description |
GO:0004857 | enzyme inhibitor activity |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAM65650.1 | 0 | 1 | 588 | 1 | 584 | pectinesterase, putative [Arabidopsis thaliana] |
RefSeq | NP_175787.1 | 0 | 1 | 588 | 1 | 584 | ATPME1; pectinesterase [Arabidopsis thaliana] |
RefSeq | NP_188047.1 | 0 | 1 | 259 | 1 | 254 | ATPMEPCRC; pectinesterase [Arabidopsis thaliana] |
RefSeq | NP_188047.1 | 0 | 48 | 586 | 431 | 966 | ATPMEPCRC; pectinesterase [Arabidopsis thaliana] |
RefSeq | XP_002304256.1 | 0 | 1 | 588 | 1 | 585 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 277 | 587 | 1 | 315 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 0 | 281 | 587 | 1 | 311 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 2e-17 | 296 | 582 | 19 | 340 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 2e-17 | 296 | 582 | 19 | 340 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 2e-17 | 296 | 582 | 19 | 340 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |