Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10013478m |
Family | GH28 |
Protein Properties | Length: 513 Molecular Weight: 55652.2 Isoelectric Point: 7.229 |
Chromosome | Chromosome/Scaffold: 3 Start: 2172805 End: 2175313 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 141 | 486 | 0 |
KGGAQLYVPPGRWLTGSFSLTNHLTLFLEDGALIVASQDPSHWEVVDPLPSYGPGIDFPGKRYKSLINGNMLHDVVVTGDNGTIDGQGLVWWDRLTSHSL KYNRPHLIEFISSENVIVSNLTFLNAPAYTFHSIYSSHVYIHKIVAHASPESLYTIGIVPDSSDNVCIQNSTINVGYDAISLKSGWDEYGLAYSRPTENV HIRNVYLRGASGSSISFGSEMSGGISGIVVDNAFLHNSLTGIAFRTTKGRGGYIKDIDISNIDMSTIGTAIVANGSFGSHPDDKYDASALPLVSHIRLNN ISGENIGVAGILFGIKESPFSSVALSNVSLLMNSGSTVSWQCSYVY |
Full Sequence |
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Protein Sequence Length: 513 Download |
KKKKNWLWLR TTKERTLLLL LLCASYSFSS SPFSLSLCLV IFGAKRSSLY SFLFLFYYPT 60 ASLQIKMSVA IILILALTSL TPNYAKDHGA GKVCDELGRR SLSTRPHSVS ITDFGAVGDG 120 KTLNTIAFQN AVFYLMSFAD KGGAQLYVPP GRWLTGSFSL TNHLTLFLED GALIVASQDP 180 SHWEVVDPLP SYGPGIDFPG KRYKSLINGN MLHDVVVTGD NGTIDGQGLV WWDRLTSHSL 240 KYNRPHLIEF ISSENVIVSN LTFLNAPAYT FHSIYSSHVY IHKIVAHASP ESLYTIGIVP 300 DSSDNVCIQN STINVGYDAI SLKSGWDEYG LAYSRPTENV HIRNVYLRGA SGSSISFGSE 360 MSGGISGIVV DNAFLHNSLT GIAFRTTKGR GGYIKDIDIS NIDMSTIGTA IVANGSFGSH 420 PDDKYDASAL PLVSHIRLNN ISGENIGVAG ILFGIKESPF SSVALSNVSL LMNSGSTVSW 480 QCSYVYGSSN LVTPEPCPEL KRDDEAYGRA AV* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 7.0e-18 | 104 | 503 | 413 | + Probable polygalacturonase At3g15720 | ||
PLN02793 | PLN02793 | 6.0e-19 | 99 | 497 | 424 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 3.0e-19 | 214 | 485 | 281 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 5.0e-20 | 99 | 470 | 391 | + polygalacturonase ADPG | ||
COG5434 | PGU1 | 4.0e-38 | 109 | 421 | 336 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAM65366.1 | 0 | 136 | 512 | 1 | 377 | polygalacturonase-like protein [Arabidopsis thaliana] |
RefSeq | NP_001032043.1 | 0 | 85 | 510 | 19 | 444 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_566292.1 | 0 | 136 | 512 | 1 | 377 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_680409.1 | 0 | 85 | 510 | 21 | 446 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_850525.1 | 0 | 67 | 512 | 1 | 446 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 2e-25 | 107 | 442 | 26 | 382 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 2e-25 | 107 | 442 | 26 | 382 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 2e-25 | 107 | 442 | 26 | 382 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 2e-25 | 107 | 442 | 26 | 382 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 2e-18 | 153 | 485 | 52 | 372 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |