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Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10013538m |
Family | CBM43 |
Protein Properties | Length: 494 Molecular Weight: 54058.1 Isoelectric Point: 5.2308 |
Chromosome | Chromosome/Scaffold: 3 Start: 1065980 End: 1068910 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 374 | 456 | 4.6e-26 |
WCMFNPNGRGNMSKLGDNIDYACSLSDCTALGYGSSCGNLDANGNASYAFNMYFQVQNQEAQACDFEGLATITTRNISQGQCN | |||
GH17 | 33 | 352 | 0 |
LGVNWGTMATHQLPPKTVVEMLRDNNIQKVKLFDADTNTMGALAGSGIEVMVAIPNDLLKAMGNPQRAKDWVQRNVSRFNFNNGVKIKYVAVGNEPFLTA YNGSFINLTYPALFNIQTALNEAGVGDFIKATVPLNADVYNSPPDNQVPSAGRFRSDIIQEMTQIVNFLAQNKAPFTVNIYPFLSLYLSSEFPFDYAFFD GQNTVNDNGVIYTNVFDANFDTLLASLKALDHGDMEVIVGEVGWPTDGDKNANVPNAERFYSGLLPRLANNVGTPVRKGYIEVYLFGLIDEDAKSVAPGN FERHWGIFKFDGKPKFPVGF |
Full Sequence |
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Protein Sequence Length: 494 Download |
MNHRAKQSTI TNATVVFIIV SSVCFFSGGV SGLGVNWGTM ATHQLPPKTV VEMLRDNNIQ 60 KVKLFDADTN TMGALAGSGI EVMVAIPNDL LKAMGNPQRA KDWVQRNVSR FNFNNGVKIK 120 YVAVGNEPFL TAYNGSFINL TYPALFNIQT ALNEAGVGDF IKATVPLNAD VYNSPPDNQV 180 PSAGRFRSDI IQEMTQIVNF LAQNKAPFTV NIYPFLSLYL SSEFPFDYAF FDGQNTVNDN 240 GVIYTNVFDA NFDTLLASLK ALDHGDMEVI VGEVGWPTDG DKNANVPNAE RFYSGLLPRL 300 ANNVGTPVRK GYIEVYLFGL IDEDAKSVAP GNFERHWGIF KFDGKPKFPV GFGGQGQKKY 360 LTGARNVQYM LNQWCMFNPN GRGNMSKLGD NIDYACSLSD CTALGYGSSC GNLDANGNAS 420 YAFNMYFQVQ NQEAQACDFE GLATITTRNI SQGQCNFPIQ IGEPSSGHYD YSYGSMVKLC 480 LVMSGLVFLL LSQ* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 3.0e-7 | 227 | 343 | 121 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 2.0e-19 | 373 | 444 | 79 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 8.0e-31 | 373 | 457 | 87 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 2.0e-71 | 36 | 352 | 321 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAS99718.1 | 0 | 34 | 488 | 26 | 481 | At1g64760 [Arabidopsis thaliana] |
RefSeq | NP_176656.1 | 0 | 34 | 488 | 26 | 481 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
RefSeq | NP_179534.1 | 0 | 30 | 461 | 18 | 448 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
RefSeq | NP_187051.3 | 0 | 1 | 491 | 1 | 491 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
RefSeq | NP_197323.1 | 0 | 1 | 486 | 1 | 488 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3ur8_B | 0 | 33 | 352 | 3 | 314 | A Chain A, Dihydroxyacetone Kinase Operon Co-Activator Dha-Dhaq |
PDB | 3ur8_A | 0 | 33 | 352 | 3 | 314 | A Chain A, Dihydroxyacetone Kinase Operon Co-Activator Dha-Dhaq |
PDB | 3ur7_B | 0 | 33 | 352 | 3 | 314 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
PDB | 3ur7_A | 0 | 33 | 352 | 3 | 314 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
PDB | 4gzj_A | 0 | 33 | 352 | 3 | 314 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |