Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10013602m |
Family | CBM43 |
Protein Properties | Length: 478 Molecular Weight: 51631.8 Isoelectric Point: 4.8287 |
Chromosome | Chromosome/Scaffold: 3 Start: 14301885 End: 14303926 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 362 | 443 | 2.8e-24 |
WCMFNPAAKDLTKLAANIDFACTFSDCTALGYGSSCNGLDAAGNASYAFNMYFQVKNQDEMACNFQGLATITTQNISQGQCN | |||
GH17 | 21 | 339 | 0 |
LGVNWGTMATHKLPPKTVVQMLKDNNIKKVKLFDADETTMGALAGSGLEVMVAIPNDQLKVMGSYDRAKEWVRKNVTRYNFDGGVNITFVAVGNEPFLKS YNGTFINLTFPALQNIQNALNEAGVGNGVKATVPLNADVYDSPPSNPVPSAGRFRPDIIGQMTQIVDFLGKNNAPITINIYPFLSLYGNDDFPLNYAFFD GATPVDDHGIAYTNVFDANFDTLVSSLKAVGHGDMPIIVGEVGWPTEGDKHANSGDAYRFYNGLLPRLGTNKGTPLRPTYIEVYLFGLLDEDAKSIAPGE FERHWGIFKFDGQPKFPID |
Full Sequence |
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Protein Sequence Length: 478 Download |
MMNLLALVVG FGMMGIVVDG LGVNWGTMAT HKLPPKTVVQ MLKDNNIKKV KLFDADETTM 60 GALAGSGLEV MVAIPNDQLK VMGSYDRAKE WVRKNVTRYN FDGGVNITFV AVGNEPFLKS 120 YNGTFINLTF PALQNIQNAL NEAGVGNGVK ATVPLNADVY DSPPSNPVPS AGRFRPDIIG 180 QMTQIVDFLG KNNAPITINI YPFLSLYGND DFPLNYAFFD GATPVDDHGI AYTNVFDANF 240 DTLVSSLKAV GHGDMPIIVG EVGWPTEGDK HANSGDAYRF YNGLLPRLGT NKGTPLRPTY 300 IEVYLFGLLD EDAKSIAPGE FERHWGIFKF DGQPKFPIDL SGQGQNKMLI GAQNVSYLSN 360 KWCMFNPAAK DLTKLAANID FACTFSDCTA LGYGSSCNGL DAAGNASYAF NMYFQVKNQD 420 EMACNFQGLA TITTQNISQG QCNFPIQIVA SPASSPSSSS LVLLIAGFWF LLSGGMF* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 0.0005 | 216 | 331 | 123 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 8.0e-16 | 361 | 431 | 81 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 6.0e-32 | 361 | 444 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 2.0e-73 | 21 | 339 | 322 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAD38251.1 | 0 | 28 | 477 | 1 | 450 | AC006193_7 Similar to glucan endo-1,3-beta-glucosidase precursor [Arabidopsis thaliana] |
GenBank | AAS99718.1 | 0 | 22 | 477 | 26 | 481 | At1g64760 [Arabidopsis thaliana] |
RefSeq | NP_176656.1 | 0 | 22 | 477 | 26 | 481 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
RefSeq | NP_179534.1 | 0 | 2 | 455 | 1 | 455 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
RefSeq | XP_002277003.1 | 0 | 4 | 448 | 7 | 453 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3f55_D | 0 | 21 | 341 | 2 | 316 | A Chain A, Pro427gln Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED With N6-Isopentenyladenine |
PDB | 3f55_C | 0 | 21 | 341 | 2 | 316 | A Chain A, Pro427gln Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED With N6-Isopentenyladenine |
PDB | 3f55_B | 0 | 21 | 341 | 2 | 316 | A Chain A, Pro427gln Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED With N6-Isopentenyladenine |
PDB | 3f55_A | 0 | 21 | 341 | 2 | 316 | A Chain A, Pro427gln Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED With N6-Isopentenyladenine |
PDB | 3em5_D | 0 | 21 | 341 | 2 | 316 | A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev B 2), A Major Allergen From Hevea Brasiliensis |