Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10013604m |
Family | CBM43 |
Protein Properties | Length: 476 Molecular Weight: 51668.5 Isoelectric Point: 6.3522 |
Chromosome | Chromosome/Scaffold: 3 Start: 10159374 End: 10161630 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 387 | 470 | 1.7e-33 |
WCVANGDAGKERLQGGLDYACGEGGADCSQIQPGANCYSPDTLEAHASFAFNSYYQKKGRAGGSCYFGGAAYVVSQPPKYGRCE | |||
GH17 | 26 | 345 | 0 |
IGVNYGRISDELPSAFKVVQLLKSQGINRVKIFDADPSVLKALSGSNIKVTVDLPNEILFSAAKRPSFAASWVKRNVAAYHPSTQIESIAVGNEVFVDPH NTTNYLIPAMRNIHKALISFNLHSDIKISSPLALSALQNSYPSSSGSFRPELIETVIKPMLDFLRETGSRLMINVYPFFAYEGNSDVIPLDYALLRENPG MVDSGNGLRYFNLFDAQIDAVFAAMSALKYDDIEIIVTETGWPSKGDENEVGATIANAASYNGNLIRRILTRGGTPLRPKADLTVYLFALFNENKKLGPT SERNYGLFFPDEKKVYDIPF |
Full Sequence |
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Protein Sequence Length: 476 Download |
MDLHLLTPLL FLILLSPLHL SDAGTIGVNY GRISDELPSA FKVVQLLKSQ GINRVKIFDA 60 DPSVLKALSG SNIKVTVDLP NEILFSAAKR PSFAASWVKR NVAAYHPSTQ IESIAVGNEV 120 FVDPHNTTNY LIPAMRNIHK ALISFNLHSD IKISSPLALS ALQNSYPSSS GSFRPELIET 180 VIKPMLDFLR ETGSRLMINV YPFFAYEGNS DVIPLDYALL RENPGMVDSG NGLRYFNLFD 240 AQIDAVFAAM SALKYDDIEI IVTETGWPSK GDENEVGATI ANAASYNGNL IRRILTRGGT 300 PLRPKADLTV YLFALFNENK KLGPTSERNY GLFFPDEKKV YDIPFTTEGL KQYHDGGGHN 360 TPVTGDHQVT TPPMSGGVSK SLNGQSWCVA NGDAGKERLQ GGLDYACGEG GADCSQIQPG 420 ANCYSPDTLE AHASFAFNSY YQKKGRAGGS CYFGGAAYVV SQPPKYGRCE FPTGY* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 0.004 | 202 | 321 | 128 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 2.0e-25 | 386 | 458 | 78 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 2.0e-41 | 386 | 471 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 3.0e-106 | 26 | 345 | 320 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAD26909.1 | 0 | 22 | 464 | 21 | 461 | putative beta-1,3-glucanase [Arabidopsis thaliana] |
RefSeq | NP_178637.2 | 0 | 22 | 475 | 21 | 472 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
RefSeq | XP_002302861.1 | 0 | 11 | 475 | 9 | 470 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002333242.1 | 0 | 18 | 475 | 16 | 470 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002525335.1 | 0 | 21 | 464 | 19 | 458 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2cyg_A | 0 | 26 | 345 | 1 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_D | 0 | 26 | 346 | 2 | 316 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_C | 0 | 26 | 346 | 2 | 316 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_B | 0 | 26 | 346 | 2 | 316 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_A | 0 | 26 | 346 | 2 | 316 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |