| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10013655m |
| Family | CBM43 |
| Protein Properties | Length: 461 Molecular Weight: 50550.7 Isoelectric Point: 8.8255 |
| Chromosome | Chromosome/Scaffold: 3 Start: 2360206 End: 2362437 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CBM43 | 371 | 454 | 2e-28 |
| WCVVAKGANWTELGEALSYACSQGNKTCDPIQSGGPCHKPDLAVLHASYAFSSYWAQFRKSGGTCSFNGLATQTIKDPSYGRCE | |||
| GH17 | 25 | 345 | 0 |
| GVNYGQLGNNLPSPSDSVNLIKSLNAKRVKLYDANPKILAALNATDITVSVMVPNELLVNISKSESLSDDWIRSNILPFYPTTKIRYLLVGNEILSSPDS ELKASLVPAMRKIQRSLKSLGVKKVKVGTSLAVDVLQTSFPPSKGEFREDISGLVMKPMLQFLNRTKSFLFVDVYPYFAWAQDQTHVDLDYALFESNNVT VTDPGTNLTYHNLFDQMIDAFVFAMKRLGYPDVRIWVAETGWPNGGDYDQIGANIYNAATYNRNVVKKLAAEPPVGTPARPGKVLPSFVFALYNENQKTG QGTERHFGLLHPNGTQVYGID | |||
| Full Sequence |
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| Protein Sequence Length: 461 Download |
| MSLLRLLALS LLISVSGAKF SGRPGVNYGQ LGNNLPSPSD SVNLIKSLNA KRVKLYDANP 60 KILAALNATD ITVSVMVPNE LLVNISKSES LSDDWIRSNI LPFYPTTKIR YLLVGNEILS 120 SPDSELKASL VPAMRKIQRS LKSLGVKKVK VGTSLAVDVL QTSFPPSKGE FREDISGLVM 180 KPMLQFLNRT KSFLFVDVYP YFAWAQDQTH VDLDYALFES NNVTVTDPGT NLTYHNLFDQ 240 MIDAFVFAMK RLGYPDVRIW VAETGWPNGG DYDQIGANIY NAATYNRNVV KKLAAEPPVG 300 TPARPGKVLP SFVFALYNEN QKTGQGTERH FGLLHPNGTQ VYGIDLSGKT TEYKESLPAP 360 ENNEVYKGKI WCVVAKGANW TELGEALSYA CSQGNKTCDP IQSGGPCHKP DLAVLHASYA 420 FSSYWAQFRK SGGTCSFNGL ATQTIKDPSY GRCEFPSVTL * |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam07983 | X8 | 2.0e-20 | 371 | 442 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 7.0e-36 | 371 | 455 | 85 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 7.0e-107 | 25 | 345 | 322 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAF20214.1 | 0 | 13 | 460 | 14 | 440 | AC012395_1 putative beta-1,3-glucanase precursor [Arabidopsis thaliana] |
| GenBank | AAM65039.1 | 0 | 13 | 460 | 14 | 460 | putative glucan endo-1-3-beta-glucosidase [Arabidopsis thaliana] |
| EMBL | CBI39470.1 | 0 | 6 | 460 | 11 | 467 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_683538.1 | 0 | 13 | 460 | 14 | 460 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
| RefSeq | XP_002334812.1 | 0 | 1 | 460 | 4 | 465 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2cyg_A | 0 | 25 | 346 | 2 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 1ghs_B | 0 | 25 | 346 | 2 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 1ghs_A | 0 | 25 | 346 | 2 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 1ghr_A | 0 | 25 | 346 | 2 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 1aq0_B | 0 | 25 | 346 | 2 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
