| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10013661m |
| Family | PL1 |
| Protein Properties | Length: 459 Molecular Weight: 51022.7 Isoelectric Point: 7.8812 |
| Chromosome | Chromosome/Scaffold: 3 Start: 8929961 End: 8932987 |
| Description | Pectate lyase family protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 169 | 374 | 0 |
| IQGEPLWITFKRDMVIRLKEELMMNSFKTIDARGANVHIADGACITIQGITNVIIHGLHIHDCKATGNTSVRSSPSYDGFRGMADGDGVNVFGSSHIWID HNSLSNCADGLVDVVMGSTAITISNNHFTHHNEVMLLGHADWYKKDKLMQVTIAYNHFGEGLKQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQ GNRYAA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 459 Download |
| MASSSPKLIS ACCLVLILIF VVCFLTSTNL WNNEIYSRSR KVKTEELSQS FNSSTMETRL 60 EGEVELNEHA VPDPDKVAHE VAALIQMSEQ NITARRKLGF FSCGNGNLID DCWRCDPKWY 120 KNRKHLAACG MGFGSKAIGG RDGHYYMVTD PSDEDVENPK KGTLRYAVIQ GEPLWITFKR 180 DMVIRLKEEL MMNSFKTIDA RGANVHIADG ACITIQGITN VIIHGLHIHD CKATGNTSVR 240 SSPSYDGFRG MADGDGVNVF GSSHIWIDHN SLSNCADGLV DVVMGSTAIT ISNNHFTHHN 300 EVMLLGHADW YKKDKLMQVT IAYNHFGEGL KQRMPRCRHG YFHVVNNDYT HWEMYAIGGS 360 ANPTINSQGN RYAAPKNRYA KEVTKRVDTE ENEWKKWNWR SENDLLVNGA FFTSSGKGAS 420 ANYAHDLSLP AKPASMVHSV TANAGPLGCR RGKPCYTS* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 4.0e-23 | 194 | 370 | 190 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 9.0e-68 | 187 | 372 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 3.0e-75 | 181 | 376 | 207 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAF43573.1 | 0 | 37 | 455 | 11 | 425 | pectate lyase [Prunus persica] |
| EMBL | CAB36835.1 | 0 | 85 | 455 | 4 | 374 | putative pectate lyase A11 (fragment) [Arabidopsis thaliana] |
| RefSeq | NP_189065.2 | 0 | 1 | 456 | 1 | 452 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | NP_567409.1 | 0 | 1 | 455 | 1 | 470 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002297822.1 | 0 | 15 | 455 | 14 | 450 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 107 | 445 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 107 | 445 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 2e-16 | 165 | 372 | 40 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1pe9_B | 0.00000000000004 | 185 | 445 | 78 | 357 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1pe9_A | 0.00000000000004 | 185 | 445 | 78 | 357 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
